Locus 8376

Sequence ID X_DroMel_CAF1
Location 20,797,592 – 20,797,711
Length 119
Max. P 0.912731
window13757

overview

Window 7

Location 20,797,592 – 20,797,711
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 92.72
Mean single sequence MFE -30.02
Consensus MFE -26.52
Energy contribution -26.68
Covariance contribution 0.16
Combinations/Pair 1.05
Mean z-score -1.50
Structure conservation index 0.88
SVM decision value 1.08
SVM RNA-class probability 0.912731
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20797592 119 - 22224390
CAUACGCAUCCUUUCCAUCCAGUUUCUAUCUCCGGCUCGCCAGAGUUAAACGCACAUUUGCGGUGGCCAGUCGGCUUGCCACUCACUUACUCCCACACACAGGCAGCUAUGAUGAUAUU
..........................((((((.((((.(((.........((((....))))(((((.((....)).)))))...................)))))))..)).)))).. ( -26.70)
>DroSec_CAF1 126044 113 - 1
CAUCCGCAUCCUU------CAGUUUCUAUCUCCGGCUGGCCAGAGUUAAACGCACAUUUGCGGUGGCCAGUCGGCUUGCCACUCACUUACACCCACACACAGGCAGCAAUGAUGAUAUU
((((.((......------............(((((((((((........((((....)))).)))))))))))..((((.....................))))))...))))..... ( -32.20)
>DroSim_CAF1 63096 113 - 1
CAUCCGCAUCCUU------CAGUUUCUAUCUCCGGCUGGCCAGAGUUAAACGCACAUUUGCGGUGGCCAGUCGGCUUGCCACUCACUUACACCCACACACAGGCAGCAAUGAUGAUAUU
((((.((......------............(((((((((((........((((....)))).)))))))))))..((((.....................))))))...))))..... ( -32.20)
>DroEre_CAF1 48809 113 - 1
AAUCUGCAUCCUU------CAGUUUCUAUCUCCGGCUGGCCAGAGUUGAACGCACAUUUGCGGUGGCCAGUCGGCUUGCCACUCACUUACUCCCACACACAGGCAGUAAUGAUGAUAUU
.............------.......((((.(((((((((((........((((....)))).)))))))))))........(((.(((((.((.......)).)))))))).)))).. ( -31.90)
>DroYak_CAF1 101001 113 - 1
CAUCUGCAUCCUU------CAGUUUCUAUCUCCGGCUGGCCAGAGUUGAACGCACAAUUGCGGUGGCCAGUCGGCUUGCCACUCACUUACUCCCACACACAGCCAGUAAUAAUAAUACU
.............------..(((..(((..(.(((((....(((((((.((((....))))(((((.((....)).))))))))...)))).......))))).)..)))..)))... ( -27.10)
>consensus
CAUCCGCAUCCUU______CAGUUUCUAUCUCCGGCUGGCCAGAGUUAAACGCACAUUUGCGGUGGCCAGUCGGCUUGCCACUCACUUACUCCCACACACAGGCAGCAAUGAUGAUAUU
.....((........................(((((((((((........((((....)))).)))))))))))..((((.....................))))))............ (-26.52 = -26.68 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:26 2006