Locus 8374

Sequence ID X_DroMel_CAF1
Location 20,794,901 – 20,794,999
Length 98
Max. P 0.661660
window13753

overview

Window 3

Location 20,794,901 – 20,794,999
Length 98
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 89.36
Mean single sequence MFE -29.37
Consensus MFE -25.48
Energy contribution -25.28
Covariance contribution -0.20
Combinations/Pair 1.09
Mean z-score -1.37
Structure conservation index 0.87
SVM decision value 0.27
SVM RNA-class probability 0.661660
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20794901 98 + 22224390
UGGCAGUUGACAGGGG--------AUGGGUGAUAAGGGAGCGGAAAUAGGGGAAGUCGAGGGAAAGCUGGAGGCGGUUCCUUCAUGGUCAGCUGCAUGCAAAAGCG
..(((((((((.....--------...........(....)................(((((((.((.....))..)))))))...)))))))))..((....)). ( -28.50)
>DroSec_CAF1 123424 98 + 1
UGGCAGUUGACAGGGG--------AUGGGUGAUAAGGGGACGGAAAUAGGGGAGGUCGAGGGAAAGCUGGAGGCGGUUCCUUCAUGGUCAGCCGCAUGCAAAAGCG
..((..(((.((...(--------.(((.((((..(....)................(((((((.((.....))..)))))))...)))).)))).)))))..)). ( -27.90)
>DroSim_CAF1 60443 98 + 1
UGGCAGUUGACAGGGG--------AUGGGUGAUAAGGGGGCGGAAAUAGGGGAGGUCGAGGGAAAGCUGGAGGCGGUUCCUUCAUGGUCAGCCGCAUGCAAAAGCG
..((..(((.((...(--------.(((.((((.....(((.............)))(((((((.((.....))..)))))))...)))).)))).)))))..)). ( -26.72)
>DroEre_CAF1 46050 97 + 1
UGGCAGUUGACAGGGGC---------GGGUGCUAAGGAGGCGGAAAUUGGUCAAGUCGAGGGAAAGCUGCAGGCGGUUCCUUCAUGGUCAACCGCAUGCAAAUGCG
..(((.(((.((...((---------((.((((.....))))....(((..((....(((((((.((.....))..))))))).))..))))))).))))).))). ( -33.20)
>DroYak_CAF1 98264 106 + 1
UGGCAGUUGACAGGGGGGGUGAACAGGGGUGAUAAGGAGACGGAAAUUAGGGAAGUCGAGGGAAAGCUGGAGGCGGUUCCUUCAUGGUCAGCCGCAUGCAAAUGCG
..(((.(((.((..(.((.(((.((.............(((.............)))(((((((.((.....))..))))))).)).))).)).).))))).))). ( -30.52)
>consensus
UGGCAGUUGACAGGGG________AUGGGUGAUAAGGGGGCGGAAAUAGGGGAAGUCGAGGGAAAGCUGGAGGCGGUUCCUUCAUGGUCAGCCGCAUGCAAAAGCG
..((.((((((...........................(((.............)))(((((((.((.....))..)))))))...)))))).))..((....)). (-25.48 = -25.28 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:23 2006