Locus 8371

Sequence ID X_DroMel_CAF1
Location 20,792,618 – 20,792,731
Length 113
Max. P 0.717816
window13748

overview

Window 8

Location 20,792,618 – 20,792,731
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.81
Mean single sequence MFE -20.28
Consensus MFE -15.16
Energy contribution -15.04
Covariance contribution -0.12
Combinations/Pair 1.18
Mean z-score -1.84
Structure conservation index 0.75
SVM decision value 0.39
SVM RNA-class probability 0.717816
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20792618 113 - 22224390
CAUUGGCCUCAAGCUAAACAAAUAGGUUUUUCAAAAUUACAACAAAAGAAACGAAAUAACAAUUGCUGAUGCGCAAUAACAAGCAGUUC-------CAGAAGGAAAAGGCAAGGGUCAAA
..(((((((...((...........((((((...............))))))............((....))))........((..(((-------(....))))...))..))))))). ( -19.86)
>DroSec_CAF1 121137 113 - 1
CACUGGCCUCAAGCUAAACAAAUAUGUUUUUCAAAAUUACAACAAACGAAACGAAAUAACAAUUGCUGAUGCGCAAUAACAAGCAGUUC-------CAGAAGGAAAAGGCAAGGGUCAAA
...((((((...(..(((((....)))))..).............................(((((......))))).....((..(((-------(....))))...))..)))))).. ( -19.40)
>DroSim_CAF1 58168 113 - 1
CACUGGCCUCAAGCUAAACAAAUAUGUUUUUCAAUAUUACAACAAAAGAAACGAAAUAACAAUUGCUGAUGCGCAAUAACAAGCAGUUC-------CAGAAGGAAAAGGCAAGGGUCAAA
...((((((...(..(((((....)))))..).............................(((((......))))).....((..(((-------(....))))...))..)))))).. ( -19.40)
>DroEre_CAF1 43785 119 - 1
CAUUGGCCUCAAGCUAAGUAAAUAUGUUUUUCAAAAUUACAACAAAAGAAACGAAAU-ACAAUUGUUGAUGCACAAUAACAAGCAGGGAAACAACAAACAAGGAAAAGGCAAGGGUCAAA
..(((((((...(((.........(((((..(.......((((((............-....)))))).(((..........))))..))))).(......).....)))..))))))). ( -20.99)
>DroYak_CAF1 95904 113 - 1
CAUUGGCCUCAAGCUAAAUAAAUAUGUUUUUCCAAAUUACAACAAAAGAAGCGAAAUAACAAUUGUUGAUGCACCAUAACAAACAGUUC-------AAGGAGGAAAAGGCAAGGGCCAAA
..(((((((...(((............((((((......((((((.................)))))).....((..(((.....))).-------..)).)))))))))..))))))). ( -21.73)
>consensus
CAUUGGCCUCAAGCUAAACAAAUAUGUUUUUCAAAAUUACAACAAAAGAAACGAAAUAACAAUUGCUGAUGCGCAAUAACAAGCAGUUC_______CAGAAGGAAAAGGCAAGGGUCAAA
...((((((...(((..........((((((...............))))))........(((((((..............)))))))...................)))..)))))).. (-15.16 = -15.04 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:18 2006