Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,334,557 – 2,334,647 |
Length | 90 |
Max. P | 0.628988 |
Location | 2,334,557 – 2,334,647 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 78.47 |
Mean single sequence MFE | -28.73 |
Consensus MFE | -19.66 |
Energy contribution | -21.30 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.21 |
Mean z-score | -1.22 |
Structure conservation index | 0.68 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.628988 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2334557 90 - 22224390 CUUACAAUCGGUUCAAGGGCGGUGUCUCCCUGAAGGACACGCCCUGCAUGGUUCUGUAUAUUUGUG---CAGGUGUGUUACAGCCACUGCCGC .................(((((((.....(((...((((((((.((((..(..........)..))---)))))))))).))).))))))).. ( -32.10) >DroVir_CAF1 1273 78 - 1 ---UGAGCUUGUAUAAGGGCGGC---------CAAGAUUUCCCCUGCAUGGUCUUAUAUAUAUGUG---CAGGUGUGUUACCGCUACCGCGAA ---.....((((.....(((((.---------.((.((....((((((((............))))---)))).)).)).)))))...)))). ( -18.40) >DroPse_CAF1 936 84 - 1 AAUACAA--GGUC---GGGCAGAGU----GUGAAAGACAUGCCCUGCGUGGUUUUCUAUAUAUGUGCUGCAGGUGUGUUACCGCUACUGCCGC .......--((.(---((((((.((----(((.....))))).))))(((((.....((((((.((...)).)))))).)))))..))))).. ( -25.60) >DroSim_CAF1 936 90 - 1 CUUACAAUCGGUUCAAGGGCGGUGUCUCCCUGAAGGACACGCCCUGCAUGGUUCUGUAUAUUUGUG---CAGGUGUGUUACAGCCACUGCCGC .................(((((((.....(((...((((((((.((((..(..........)..))---)))))))))).))).))))))).. ( -32.10) >DroEre_CAF1 1014 90 - 1 CUUACAAUCGGUUCAAGGGCGGUGUCUCCCUGAAGGACACGCCCUGCAUGGUUCUGUAUAUUUGUG---CAGGUGUGUUACAGCCACUGCCGC .................(((((((.....(((...((((((((.((((..(..........)..))---)))))))))).))).))))))).. ( -32.10) >DroYak_CAF1 1023 90 - 1 CUUACAAUCGGUACAAGGGCGGUGUCUCCCUGAAGGACACGCCCUGCAUGGUUCUGUUUAUUUGUG---CAGGUGUGUUACAGCCACUGCCGC .................(((((((.....(((...((((((((.((((..(..........)..))---)))))))))).))).))))))).. ( -32.10) >consensus CUUACAAUCGGUUCAAGGGCGGUGUCUCCCUGAAGGACACGCCCUGCAUGGUUCUGUAUAUUUGUG___CAGGUGUGUUACAGCCACUGCCGC ........((((...((((((.(((((.......)))))))))))...(((((..(((((((((.....)))))))))...)))))..)))). (-19.66 = -21.30 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:57 2006