| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,783,619 – 20,783,712 |
| Length | 93 |
| Max. P | 0.909267 |
| Location | 20,783,619 – 20,783,712 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.62 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -22.73 |
| Energy contribution | -22.82 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.909267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20783619 93 - 22224390 UUUUGUGUUCAGCAAUAGCAUCAAA-AUUGCAAAGAAAAGCCAGCAAACAGUCAGUAAAAUAUUGUAGCUGGCAGCUG---CGCGA-----------------------GGGCUCUAAAA (((((((..((((....(((.....-..)))........((((((..(((((.........))))).)))))).))))---)))))-----------------------))......... ( -25.60) >DroPse_CAF1 121350 89 - 1 UUUUGUGUUCUGCAAUAGCAUCAAA-AUUGCAAAGAAAAGCCAGCAAACAGUCAGUAAAAUAUUGUAGCUGGCAGCUG---CUCGA-----------------------UGGUCU----G ..(((.((...((....(((.....-..)))........((((((..(((((.........))))).)))))).)).)---).)))-----------------------......----. ( -20.00) >DroSec_CAF1 112238 96 - 1 UUUUGUGUUCAGCAAUAGCAUCAAA-AUUGCAAAGAAAAGCCAGCAAACAGUCAGUAAAAUAUUGUAGCUGGCAGCUGCGGCGCGA-----------------------GGACUCCAAAA (((((((((((((....(((.....-..)))........((((((..(((((.........))))).)))))).)))).)))))))-----------------------))......... ( -29.10) >DroSim_CAF1 48116 96 - 1 UUUUGUGUUCAGCAAUAGCAUCAAA-AUUGCAAAGAAAAGCCAGCAAACAGUCAGUAAAAUAUUGUAGCUGGCAGCUGCGGCGCGA-----------------------GGGCUCCAAAA (((((((((((((....(((.....-..)))........((((((..(((((.........))))).)))))).)))).)))))))-----------------------))......... ( -29.10) >DroYak_CAF1 86863 93 - 1 UUUUGUGUUCAGCAAUAGCAUCAAA-AUUGCAAAGAAAAGCCAGCAAACAGUCAGUAAAAUAUUGUAGCUGGCAGCUG---CGCGA-----------------------GGGCUCCAAAA (((((((..((((....(((.....-..)))........((((((..(((((.........))))).)))))).))))---)))))-----------------------))......... ( -25.60) >DroAna_CAF1 43186 115 - 1 UUUUGUGUUGAGCAAUAGCUUCAAAAAUGGCAAAGAAAAGCCGGCAAACAGUCAGUAAAAUAUUGUAGCUGGCAGCUG---CGCGAAAGGCCAGUGGCGUAGGGGGGGGGGGCUCUAA-- ((((((((..(((....(((........)))........((((((..(((((.........))))).)))))).))))---))))))).(((...))).(((((........))))).-- ( -31.00) >consensus UUUUGUGUUCAGCAAUAGCAUCAAA_AUUGCAAAGAAAAGCCAGCAAACAGUCAGUAAAAUAUUGUAGCUGGCAGCUG___CGCGA_______________________GGGCUCCAAAA ..(((((..((((....(((........)))........((((((..(((((.........))))).)))))).))))...))))).................................. (-22.73 = -22.82 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:14 2006