| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,779,355 – 20,779,458 |
| Length | 103 |
| Max. P | 0.638596 |
| Location | 20,779,355 – 20,779,458 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 80.80 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -14.32 |
| Energy contribution | -15.82 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20779355 103 + 22224390 AAAAUAUUAGUCAUUGCCUUUAAGUUCU---UUGGCUUUUGAUUAAUGCAACGGACAUUUCUCAAAGGCACAGAUUUGGCUUAAGCGAAGGCUAAGAUGCUCUUAA ......((((((.((((..(((((((.(---(((((((((((..(((((....).))))..)))))))).))))...))))))))))).))))))........... ( -28.50) >DroSec_CAF1 107957 103 + 1 AAAAUAUUAGUCAUUUCCUUUAAGUUCU---CUGGCUUUUGAUUAAUGCAGUGGACAUUUCUCAAAGGCACAGACAUGGCUUAAGCGAAGGCUAAGAUGCUCUUAA ......((((((..(((.((((((((.(---(((((((((((..(((((....).))))..)))))))).))))...)))))))).)))))))))........... ( -28.90) >DroSim_CAF1 43507 103 + 1 AAAAUAUUAGUCAUUGCCUUUAAGUUCU---CUGGCUUUUGAUUAAUGCAGUGGACAUUUCUCAAAGGCACAGACAUGGCUUAAGCGAAGGCUAAGAUGAUCUUAG ......((((((.((((..(((((((.(---(((((((((((..(((((....).))))..)))))))).))))...))))))))))).))))))........... ( -31.10) >DroEre_CAF1 30656 97 + 1 AAAAUAUUAGUCAUUGCCUUUAAGUUCU---UUGGCUUUUGAUUAAUGCAGUGGACAUUUCUCAGAGG------CUGGGCUUAAGCGAAGGAUAAGAUGCCCUUAA .........(((.((((..((((((((.---..(((((((((..(((((....).))))..)))))))------))))))))))))))..)))............. ( -23.20) >DroYak_CAF1 82721 97 + 1 AAAAUAUUAGCCAUUGCCUUUAACUUCU---UUGGCUUUUGAUUAAUGCAGUGGACAUUUCUCAGAGA------CUUGGCUUAAGCGAAGGCUAAGAUGCCCUUGA ........(((((..(((..........---..)))((((((..(((((....).))))..)))))).------..)))))....(((.(((......))).))). ( -21.10) >DroAna_CAF1 37166 86 + 1 GAAAUAUUAGUCAUUGCCUUUAAGUUCUUUUUUGGCUUUUGAUUAAUAAAGCGAGCAUUUCUCAGGGA------UUUGCCUAAAGG-UGGACU------------- ........((((...(((((((............(((((........)))))..(((..((.....))------..))).))))))-).))))------------- ( -19.60) >consensus AAAAUAUUAGUCAUUGCCUUUAAGUUCU___UUGGCUUUUGAUUAAUGCAGUGGACAUUUCUCAAAGG______CUUGGCUUAAGCGAAGGCUAAGAUGCUCUUAA ......((((((.((((..(((((((.........(((((((..((((.......))))..))))))).........))))))))))).))))))........... (-14.32 = -15.82 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:13 2006