Locus 8364

Sequence ID X_DroMel_CAF1
Location 20,766,392 – 20,766,491
Length 99
Max. P 0.785952
window13735

overview

Window 5

Location 20,766,392 – 20,766,491
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.51
Mean single sequence MFE -26.35
Consensus MFE -17.08
Energy contribution -17.63
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -2.15
Structure conservation index 0.65
SVM decision value 0.57
SVM RNA-class probability 0.785952
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20766392 99 + 22224390
UUUGAUU-UUGUAUUUGGUGUA--UCGCGCGGAGCGCAGCGAUAAAAAUGCUGCUAAAGUAUAAAUUAUGCCAAUAUA-----AGUU----GGAAAAUGCGCGAGAUCGCA---------
.......-.........(((..--(((((((....((((((.......))))))................(((((...-----.)))----))....)))))))...))).--------- ( -27.50)
>DroPse_CAF1 113388 106 + 1
UUGUACGAGAGUAUUUUGUGCAUUUCGUGCCGAGCGCAGCGAUAAAAAUGCUGCUAAAGUAUAAAUUAUGCCAAUAUAUUGUAAGUUUUCCAAAAAAUUCGCAA-----CA---------
..((((((((((((...)))).)))))))).....((((((.......))))))....(((((...))))).......(((..((((((....))))))..)))-----..--------- ( -22.80)
>DroSec_CAF1 85526 99 + 1
UUUGAUU-UUGUAUUUGGUGUA--UCGCGCGGAGCUCAGCGAUAAAAAUGCUGCUAAAGUAUAAAUUAUGCCAAUAUA-----AGUG----GGAAAAUCCGCGAGAUCGCA---------
...((((-((((..(((((.((--((((...(....).))))))...(((((.....))))).......)))))....-----....----((.....))))))))))...--------- ( -24.70)
>DroEre_CAF1 22823 99 + 1
UUUGAUU-UUGUAUUUGGUGUA--UCGCGCACAGCGCAGCGAUAAAAAUGCUGCUAAAGUAUAAAUUAUGCCAAUAUA-----AGUU----GCAAAAUGCGCGAGAUCGCA---------
.......-.........(((..--(((((((((((((((((.......))))))....(((((...))))).......-----.)))----).....)))))))...))).--------- ( -27.00)
>DroYak_CAF1 72792 99 + 1
UUUGAUU-UUGUAUUUGGUGUA--UCGCGCGGAGCGCAGCGAUAAAAAUGCUGCUAAAGUAUAAAUUAUGCCAAUAUA-----AGUU----GGUAAAUGCGCGAGAUCGCA---------
.......-.........(((..--(((((((....((((((.......))))))..............(((((((...-----.)))----))))..)))))))...))).--------- ( -30.30)
>DroAna_CAF1 28792 102 + 1
UUGUAUU-U------UGGUAUU--UCGUGCCGAGCGCAGCGAUAAAAAUGCUGCUAAAGUAUAAAUUAUGCCAAUAUA-----AGUU----GGAAAAUGCGCGAAAAUGCACCAACAAAC
.......-(------((((.((--((((((.....((((((.......))))))................(((((...-----.)))----)).....))))))))....)))))..... ( -25.80)
>consensus
UUUGAUU_UUGUAUUUGGUGUA__UCGCGCGGAGCGCAGCGAUAAAAAUGCUGCUAAAGUAUAAAUUAUGCCAAUAUA_____AGUU____GGAAAAUGCGCGAGAUCGCA_________
.................(((....((((((.....((((((.......))))))....(((((...)))))...........................))))))...))).......... (-17.08 = -17.63 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:07 2006