Locus 8361

Sequence ID X_DroMel_CAF1
Location 20,756,598 – 20,756,699
Length 101
Max. P 0.556646
window13729

overview

Window 9

Location 20,756,598 – 20,756,699
Length 101
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 80.23
Mean single sequence MFE -22.48
Consensus MFE -15.49
Energy contribution -15.55
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -1.24
Structure conservation index 0.69
SVM decision value 0.05
SVM RNA-class probability 0.556646
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20756598 101 - 22224390
---------CAGUGUUCUCUGUGCUGUGCUUUUAAUUGAUAUCAUU-GGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAGCCAGUAAAAAUUAUCCUUGCUCGGCCGC-------
---------(((......))).((((.((.(((((((((.(((((.-....))))).))))))))).....((((((.....)))))).............)).))))...------- ( -26.60)
>DroPse_CAF1 105007 101 - 1
UUUU----UUGUUUUCUGCUGU-----GCUCUUAAUUGAUAUCGUUCGGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAACCAGCUAAAAUUAUCCCUACACAUCC-C-------
....----.........(((((-----....((((((((.(((((......))))).)))))))))))))((((((.......))))))....................-.------- ( -20.30)
>DroSec_CAF1 76020 96 - 1
---------CAGUGUUCUCUGU-----GCUUUUAAUUGAUAUCAUU-GGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAGCAAGUAAAAAUUAUCCUUGCUCGGCCGC-------
---------(((......))).-----((((((((((((.(((((.-....))))).))))))))).))).((.((((...((((((...........)))))).))))))------- ( -24.70)
>DroEre_CAF1 13225 96 - 1
---------CAGUGUUCUCUGU-----GCUUUUAAUUGAUAUCAUU-GGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUACGCCAGUAAAAAUUAUCCUUGCUCAGCCGC-------
---------..(((....(((.-----((.(((((((((.(((((.-....))))).))))))))).....((((((.....)))))).............)).))).)))------- ( -22.90)
>DroAna_CAF1 18339 101 - 1
---------CAGUGUUC--UGU-----GCUUUUAAUUGAUAUCAUU-GACCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAACCAGUAAAAAUUAUCUUUGCCCAGCGGCGUUUGGU
---------((.(((((--...-----......((((((.(((((.-....))))).))))))))))).))(((((.......))))).......(((..((((....))))...))) ( -21.20)
>DroPer_CAF1 106115 105 - 1
UUUGUUUUUUUGUUUCUUCUGU-----GCUCUUAAUUGAUAUCGUUCGGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAACCAGCUAAAAUUAUCCCUAUACAUCC-C-------
..................((((-----....((((((((.(((((......))))).))))))))))))(((((((.......)))))))...................-.------- ( -19.20)
>consensus
_________CAGUGUUCUCUGU_____GCUUUUAAUUGAUAUCAUU_GGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAACCAGUAAAAAUUAUCCUUGCUCAGCCGC_______
...........................((((((((((((.(((((......))))).))))))))).))).(((((.......))))).............................. (-15.49 = -15.55 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:02 2006