Locus 8360

Sequence ID X_DroMel_CAF1
Location 20,754,976 – 20,755,073
Length 97
Max. P 0.532892
window13728

overview

Window 8

Location 20,754,976 – 20,755,073
Length 97
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 83.86
Mean single sequence MFE -28.67
Consensus MFE -22.97
Energy contribution -23.30
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.80
SVM decision value -0.00
SVM RNA-class probability 0.532892
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20754976 97 - 22224390
ACCCCUUGGACUGACUGGGAG---CUAACCAGCCGCCUGUGCUGUGGAACCCCCACCCCUCCUCACCACCUCACUGGGCCAAUUCCACGGCCAUGGCCAU
.((....))...(.((((...---....)))).)(((((.(((((((((..((((...................))))....))))))))))).)))... ( -28.91)
>DroSec_CAF1 74378 85 - 1
ACCCCUUGGACUGACUGGGCGCUGCUAACCAGCCCCCUGUGCUGUGGAACCCC---------------CCUCUCUGGGCCAAUUCCACGGCCAUGGCCAU
......(((.((.((.(((.((((.....)))).))).))(((((((((...(---------------((.....)))....)))))))))...))))). ( -32.60)
>DroSim_CAF1 19215 85 - 1
ACCCCUUGGACUGACUGGGCGCUGCUAACCAGACCCCUGUGCUAUGGAACCCC---------------CCUCUCUGGGCCAAUUCCACGGCCAUGGCCAU
......(((.....((((..........))))..((.((.((..(((((...(---------------((.....)))....)))))..)))).))))). ( -24.50)
>consensus
ACCCCUUGGACUGACUGGGCGCUGCUAACCAGCCCCCUGUGCUGUGGAACCCC_______________CCUCUCUGGGCCAAUUCCACGGCCAUGGCCAU
......(((.....((((..........))))...((((.((((((((((((.......................)))....))))))))))).))))). (-22.97 = -23.30 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:01 2006