Locus 836

Sequence ID X_DroMel_CAF1
Location 2,329,782 – 2,329,889
Length 107
Max. P 0.878921
window1350

overview

Window 0

Location 2,329,782 – 2,329,889
Length 107
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 79.75
Mean single sequence MFE -29.90
Consensus MFE -22.70
Energy contribution -22.62
Covariance contribution -0.08
Combinations/Pair 1.21
Mean z-score -1.75
Structure conservation index 0.76
SVM decision value 0.91
SVM RNA-class probability 0.878921
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2329782 107 + 22224390
UG-----CUCCCCUAUUUGUAUUUUGUAUUUGACUUACGCUCCUGACAGUGCUUGCCACUGAAUCCGAAAGGACAGGAGCAUACGGCCACGUCCUCCUGUUCACUGCAGCUU
..-----.........((((((...(((.......)))(((((((.(((((.....)))))..(((....))))))))))))))))..........((((.....))))... ( -30.20)
>DroSec_CAF1 1036 99 + 1
UG-----CUCCCCU--------UUUGUAUUUGACUUACGUUCCUGACAGUGCUUGCCACUGAAUCCGAAAGGACAGGAGCAUACGGCCACGUCCUCCUGCUCACUGCAGCUU
.(-----((.....--------...(((.......)))(((((((.(((((.....)))))..(((....))))))))))....))).........((((.....))))... ( -29.50)
>DroSim_CAF1 942 99 + 1
UG-----CUCCCCU--------UUUGUAUUUGACUUACGUUCCUGACAGUGCUUGCCACUGAAUCCGAAAGGACAGGAGCAUACGGCCACGUCCUCCUGCUCACUGCAGCUU
.(-----((.....--------...(((.......)))(((((((.(((((.....)))))..(((....))))))))))....))).........((((.....))))... ( -29.50)
>DroEre_CAF1 1016 104 + 1
UGUCUGCCUCCCCA--------UUUGUAUUUGACUUACGCUCCUGGCAUUGCUUGCCACUGAAUCCGAAAGGACAGGAGCAUACGGCCAUGCCCUGCUGUUCGCUGCAGCUU
.....(((......--------...(((.......)))((((((((((.....))))......(((....))).))))))....)))........(((((.....))))).. ( -34.10)
>DroYak_CAF1 1188 99 + 1
UA-----CUCCGCA--------ACUGUAUUUGACUUACGCUCCUGACAGUGUUUUCCACUGAAUCCAACAGGACAGGCGCAUACGGCCACGUCCUCUUGUUCAGUGCAGAUU
..-----.......--------.(((((((.(((....((.((((.(((((.....)))))..(((....))))))).))..(((....)))......))).)))))))... ( -28.20)
>DroAna_CAF1 905 104 + 1
AG-----CUCAUCA---GGAACUCUAAAGUAAACCUACGUUCUUGGCAGUGCUUGCCACUGAAGCCCACCAGGCAGGAGCACACAGCCUCCUCGUCCUGUUCGCUGCAGGUG
.(-----((...((---(((((................)))))))(((((((((.......))))....(((((((((((.....).))))).).))))...))))).))). ( -27.89)
>consensus
UG_____CUCCCCA________UUUGUAUUUGACUUACGCUCCUGACAGUGCUUGCCACUGAAUCCGAAAGGACAGGAGCAUACGGCCACGUCCUCCUGUUCACUGCAGCUU
......................................(((((((.(((((.....)))))..(((....))))))))))................((((.....))))... (-22.70 = -22.62 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:56 2006