Locus 8358

Sequence ID X_DroMel_CAF1
Location 20,742,629 – 20,742,737
Length 108
Max. P 0.812587
window13725

overview

Window 5

Location 20,742,629 – 20,742,737
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 78.83
Mean single sequence MFE -37.76
Consensus MFE -26.79
Energy contribution -27.43
Covariance contribution 0.64
Combinations/Pair 1.27
Mean z-score -1.49
Structure conservation index 0.71
SVM decision value 0.65
SVM RNA-class probability 0.812587
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20742629 108 + 22224390
UUCCAGGGACUCCUCCGAGUCCUUGAACAGCGGUAGACCAACCCAGCCCGCGUCUAGGCGAUCAAUGGGCUGGAACUUUAGUUUUUCGCCCCGACGAUAAAGCCCGCC
...(((((((((....)))))))))....((((.........(((((((((((....))).....)))))))).......((((((((......))).))))))))). ( -40.60)
>DroSec_CAF1 63812 108 + 1
CUUCAGGGAUUCCUCCGAGUUCUUGAACAGCGGUAGACCAACACAGCCCGCGUCUAGACGAUCAAUGGGCUGGAACUUUAGCUUUUCGCUCCGACGAUAAAGUCCGCC
.(((((((((((....)))))))))))..((((..........((((((((((....))).....)))))))........((((((((......))).))))))))). ( -33.90)
>DroSim_CAF1 8628 108 + 1
CUUCAGGGAUUCCUCCGAGUUCUUGAACAGCGGUAGACCAACCCAGCCCGCGUCUAGGCGAUCAAUGGGCUGGAACUUUAGCUUUUCGCUCCGACGAUAAAGUCCGCC
.(((((((((((....)))))))))))..((((.........(((((((((((....))).....)))))))).......((((((((......))).))))))))). ( -37.60)
>DroEre_CAF1 865 108 + 1
CUCCAGGGAUUCGUCGGAGUCCUUGAACAGCGGCACACCCGAACAGCCCGCGUCCACGCGAUCUAUGGGCUGGUACUUCAGUUUCUCGGCCCGACUAUAAAGACCGCC
...(((((((((....)))))))))....(((((..........((..((((....))))..)).((((((((.((....))...))))))))........).)))). ( -37.30)
>DroYak_CAF1 49785 108 + 1
CUCCAGGGACUCGUCCGAGUUCCUGAACAGCGGCAGUCCCGCACAGCCCACGUCCAGGCGAUCUAUGGGCUGGAACUUUAGCUUCUCGGCCCGACUAUAAAACCCGCC
...(((((((((....)))))))))....((((.((((.......(((........))).......((((((((((....).))).)))))))))).......)))). ( -38.60)
>DroAna_CAF1 4638 105 + 1
CUCCACGUCGUCCUCGGCGU---CGAAGAGCGGCGUCUUCAGGCAUCCGGCGUCCAGACGAUCGAUCGGCUGGUACUUCAGUCCAUCCCCCAGCCGAUAGAGUCCGUG
...(((((((((...(((((---((((((......))))).((...))))))))..)))))((.(((((((((................))))))))).))...)))) ( -38.59)
>consensus
CUCCAGGGAUUCCUCCGAGUUCUUGAACAGCGGCAGACCAACACAGCCCGCGUCCAGGCGAUCAAUGGGCUGGAACUUUAGCUUUUCGCCCCGACGAUAAAGUCCGCC
...(((((((((....)))))))))....((((..........((((((((((....))).....)))))))...(((((.....((.....))...))))).)))). (-26.79 = -27.43 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:59 2006