| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,740,195 – 20,740,305 |
| Length | 110 |
| Max. P | 0.868514 |
| Location | 20,740,195 – 20,740,305 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.89 |
| Mean single sequence MFE | -37.23 |
| Consensus MFE | -24.51 |
| Energy contribution | -24.30 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20740195 110 - 22224390 GAGCUUCCUAACUUUUAUAGUAGAGGUGGAGAAACAUCAGUGUC---AUCGAUGUUCUCGGAAAAUCGCCAAAAUCGAUGUUUUUCCAU--CUCUACUGCGCAUUGGAGGAGAAA----- ....(((((........(((((((((((((((((((((.((...---..((((.(((...))).)))).....)).)))))))))))))--))))))))........)))))...----- ( -40.89) >DroSec_CAF1 47895 120 - 1 GAGCUUUCUAGCAUUUAAAGUAGAGGUGGAGAAGCAUCGGUGCCAAGAUCGAUGUUCUCGAAAAAUCGCAAACAUCGAUGUUUUUCGAGGAAUCUACUGCGCAUCGGAGGAGAAAAGCGU ..(((....)))......((((((..(.(((((((((((((......)))((((((..(((....)))..)))))))))))))))).)....))))))((((.((......))...)))) ( -34.90) >DroSim_CAF1 4611 120 - 1 GAGCUUUCUAACGUUUGAAGGAUACGUGGAGAAGCAUCGGUGCCGAGAUCGAUGUUCUCGAAAAAUCGCAAACAUCGAUGUUUUUCGAGGAAUCUACUGCGCAUCGGAGGAGAAAAGCGU ..(((((((..........((((.(.(.((((((((((((((.(((..((((.....))))....)))....)))))))))))))).).).)))).((.((...)).)).)).))))).. ( -35.90) >consensus GAGCUUUCUAACAUUUAAAGUAGAGGUGGAGAAGCAUCGGUGCC_AGAUCGAUGUUCUCGAAAAAUCGCAAACAUCGAUGUUUUUCGAGGAAUCUACUGCGCAUCGGAGGAGAAAAGCGU ..(((((...((((((.....))))))...))))).(((((((....(((((((((..(((....)))..)))))))))((.................)))))))))............. (-24.51 = -24.30 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:58 2006