| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,736,798 – 20,736,893 |
| Length | 95 |
| Max. P | 0.910754 |
| Location | 20,736,798 – 20,736,893 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 95.79 |
| Mean single sequence MFE | -24.94 |
| Consensus MFE | -21.37 |
| Energy contribution | -22.87 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910754 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20736798 95 - 22224390 AAUGUGCCCGCAUUAAUAUGCAAUAUUUUUGUUAACCGCAAAAAGGCAAAACCGGCGGCAGGCCAAAAACCCCACAAAAGGCGAAAGAGUGACCA ....((((.((((....))))....(((((((.....))))))))))).....(((.....)))........(((......(....).))).... ( -19.20) >DroSec_CAF1 44621 95 - 1 AAUGUGCCCGCAUUAAUAUGCAAUAUUUUUGUUAACCGCAAAAAGGCAAAACCGGCGGCAGGCCAAAAACCCCACAAAGGGCGAAAGAGUGGCCA ....((((.((.......(((....(((((((.....))))))).)))......))))))(((((.....(((.....)))(....)..))))). ( -28.82) >DroSim_CAF1 1313 95 - 1 AAUGUGCCCGCAUUAAUAUGCAAUAUUUUUGUUAACCGCAAAAAGGCAAAACCGGCGGCAGGCCAAAAACCCCACAAAGGGCGAAAGAGUGGCCA ....((((.((.......(((....(((((((.....))))))).)))......))))))(((((.....(((.....)))(....)..))))). ( -28.82) >DroYak_CAF1 45305 91 - 1 AAUGUGCCCACAUUAAUAUGCAAUAUUUUUGUUAACCGCAAAAUGGCAAAACCG---GCAGGCCAAAAACCCCACAAAGGGCGAAAGA-UGGCCA ....((((.(((..(((((...)))))..))).....((......))......)---)))(((((.....(((.....)))(....).-))))). ( -22.90) >consensus AAUGUGCCCGCAUUAAUAUGCAAUAUUUUUGUUAACCGCAAAAAGGCAAAACCGGCGGCAGGCCAAAAACCCCACAAAGGGCGAAAGAGUGGCCA ....((((.((.......(((....(((((((.....))))))).)))......))))))(((((....(((......)))(....)..))))). (-21.37 = -22.87 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:54 2006