Locus 8354

Sequence ID X_DroMel_CAF1
Location 20,736,024 – 20,736,118
Length 94
Max. P 0.761351
window13718

overview

Window 8

Location 20,736,024 – 20,736,118
Length 94
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 76.67
Mean single sequence MFE -19.68
Consensus MFE -11.06
Energy contribution -11.06
Covariance contribution -0.00
Combinations/Pair 1.32
Mean z-score -1.85
Structure conservation index 0.56
SVM decision value 0.50
SVM RNA-class probability 0.761351
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20736024 94 + 22224390
AAUUGACAAAUUGCCUACAUUGAAGCGCUAAUUUUUC-AACAAGAGAAAGAAGUGCAACAAAGG-GAA-GUGGGAUUGGAGUAGGUA---------AGAACAAAUA-------
..(((.....((((((((.(..(.(((((..((((((-.....))))))..))))).((.....-...-))....)..).)))))))---------)...)))...------- ( -22.20)
>DroSec_CAF1 43723 94 + 1
AAUUGACAAAUUGCCUACAUUGAAGCGCUAAUUUUUC-AGCAAGAGAAAGAAGUGUGACAAAGG-GAA-GUAGGAUUGGAGUAGCUA---------AAAAUAAAUA-------
......(((....(((((.(((..(((((..((((((-.....))))))..)))))..)))...-...-))))).))).........---------..........------- ( -16.30)
>DroSim_CAF1 413 94 + 1
AAUUGACAAAUUGCCUACAUUGAAGCGCUAAUUUUUC-AGCAAGAGAAAGAAGUGUGACAAAGG-GAA-GUAGGAUUGGAGUAGCUA---------AAAAUAAAUA-------
......(((....(((((.(((..(((((..((((((-.....))))))..)))))..)))...-...-))))).))).........---------..........------- ( -16.30)
>DroYak_CAF1 44454 95 + 1
AAUUGACAAAUUGCCUACAUUGAAGCGCUAAUUUUUC-AGCAAGAGAAAAAAGUGCGGCAAAGGGGGA-GUGGGAUUGGUGAAAGUA---------AGUACAAAUC-------
.((..((..(((.(((...(((..(((((..((((((-.....))))))..)))))..)))..))).)-))..).)..)).......---------..........------- ( -21.10)
>DroAna_CAF1 587 107 + 1
AAUUGACAAAUUGCCUACAUUGAGGCGCUAAUUUCUUAAGCGAAAGAGAGA-----GGCAGAGA-GAAGGUAGCAACGGUAAUGGUAGCGGAGCUUAAGCUGAAGAGCAGGUA
...........(((((.(.((..((((((..((((((......))))))..-----))).....-......(((..((.((....)).))..)))...)))..)).).))))) ( -22.50)
>consensus
AAUUGACAAAUUGCCUACAUUGAAGCGCUAAUUUUUC_AGCAAGAGAAAGAAGUGCGACAAAGG_GAA_GUAGGAUUGGAGUAGGUA_________AAAAUAAAUA_______
.............(((((.(((..(((((..((((((......))))))..)))))..)))........)))))....................................... (-11.06 = -11.06 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:53 2006