| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,735,504 – 20,735,610 |
| Length | 106 |
| Max. P | 0.944733 |
| Location | 20,735,504 – 20,735,610 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 96.24 |
| Mean single sequence MFE | -20.07 |
| Consensus MFE | -19.41 |
| Energy contribution | -19.19 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.944733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20735504 106 - 22224390 CCUGCCACACAUCCAUAUCCACAUUCAUUCAAAUUCUCCACUACUC-CUUCUUGCGGCUUUUUUUUUUUUGGGCAGCCGCAACACCGUUAUUGCACCGCGUGUGUGU .....(((((((.(................................-....((((((((.(((.......))).))))))))....((....))...).))))))). ( -20.90) >DroSec_CAF1 43207 105 - 1 CCUGCCACACAUCCAUAUCCACAUUCAUUCAAAUUCUCCACUACUCUCUUCUUGCGGCUUUUUUUUUUU--GGCAGCCGCAACACCGUUAUUGCACCGCGUGUGUGU .....(((((((.(.....................................((((((((.((.......--)).))))))))....((....))...).))))))). ( -20.40) >DroYak_CAF1 43926 104 - 1 CCUGCCACACAUCCAUAUCCACAUUCAUUCAAAUUCUCCAUUACUCUCUUCUUGCGGCUUUUUUUU-UU--GGCAGCCGUAACACCGUUAUUGCACCGCGUGUGUGU .....(((((((.(.....................................((((((((.((....-..--)).))))))))....((....))...).))))))). ( -18.90) >consensus CCUGCCACACAUCCAUAUCCACAUUCAUUCAAAUUCUCCACUACUCUCUUCUUGCGGCUUUUUUUUUUU__GGCAGCCGCAACACCGUUAUUGCACCGCGUGUGUGU .....(((((((.(.....................................((((((((...............))))))))....((....))...).))))))). (-19.41 = -19.19 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:52 2006