Locus 8352

Sequence ID X_DroMel_CAF1
Location 20,734,754 – 20,734,856
Length 102
Max. P 0.916182
window13715 window13716

overview

Window 5

Location 20,734,754 – 20,734,856
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 94.77
Mean single sequence MFE -31.90
Consensus MFE -28.27
Energy contribution -28.17
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -2.50
Structure conservation index 0.89
SVM decision value 0.95
SVM RNA-class probability 0.888673
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20734754 102 + 22224390
ACCGCCGGCGCUGCGGAGUUGCAACUUCUGGAGAGAUUCGGUUCUCUCCAAAACUGCAUUGGCUACGAACUCUGUCUAAAACCAGUGACAAUUUUCGAAAUU
...(((((.((...(((((....)))))((((((((......)))))))).....)).)))))..((((...((((..........))))...))))..... ( -31.30)
>DroSec_CAF1 42403 102 + 1
ACCGCCGGCGCUGCGGAGUUGCAACUUCUGGAGAGAUUCGGUUCUCUCCAAAACUGCAUUGGCUACGAACUCUGUCUAAAACUAAUGACAAUUUUCGAAAUU
...(((((.((...(((((....)))))((((((((......)))))))).....)).)))))..((((...((((..........))))...))))..... ( -31.30)
>DroYak_CAF1 43106 102 + 1
AACGUCGGCGCUGCGGAGUUGCAACUUCUGGAGAGAUUCGGUUCUCUCCAAAACUGCAUUGCCUACGAACUUUGUCUAAAACUAGUGGCAAUUUUUGAAAUU
..(((.((((.((((((((....)))))((((((((......)))))))).....))).)))).)))....(((((..........)))))........... ( -33.10)
>consensus
ACCGCCGGCGCUGCGGAGUUGCAACUUCUGGAGAGAUUCGGUUCUCUCCAAAACUGCAUUGGCUACGAACUCUGUCUAAAACUAGUGACAAUUUUCGAAAUU
...(((((.((...(((((....)))))((((((((......)))))))).....)).)))))..((((...((((..........))))...))))..... (-28.27 = -28.17 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 20,734,754 – 20,734,856
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 94.77
Mean single sequence MFE -34.23
Consensus MFE -29.45
Energy contribution -30.23
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.95
Structure conservation index 0.86
SVM decision value 1.11
SVM RNA-class probability 0.916182
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20734754 102 - 22224390
AAUUUCGAAAAUUGUCACUGGUUUUAGACAGAGUUCGUAGCCAAUGCAGUUUUGGAGAGAACCGAAUCUCUCCAGAAGUUGCAACUCCGCAGCGCCGGCGGU
.....((((..(((((..........)))))..))))..(((...((..(((((((((((......)))))))))))(((((......))))))).)))... ( -35.50)
>DroSec_CAF1 42403 102 - 1
AAUUUCGAAAAUUGUCAUUAGUUUUAGACAGAGUUCGUAGCCAAUGCAGUUUUGGAGAGAACCGAAUCUCUCCAGAAGUUGCAACUCCGCAGCGCCGGCGGU
.....((((..(((((..........)))))..))))..(((...((..(((((((((((......)))))))))))(((((......))))))).)))... ( -35.50)
>DroYak_CAF1 43106 102 - 1
AAUUUCAAAAAUUGCCACUAGUUUUAGACAAAGUUCGUAGGCAAUGCAGUUUUGGAGAGAACCGAAUCUCUCCAGAAGUUGCAACUCCGCAGCGCCGACGUU
....((.(((((((....))))))).)).......(((.(((.......(((((((((((......)))))))))))(((((......)))))))).))).. ( -31.70)
>consensus
AAUUUCGAAAAUUGUCACUAGUUUUAGACAGAGUUCGUAGCCAAUGCAGUUUUGGAGAGAACCGAAUCUCUCCAGAAGUUGCAACUCCGCAGCGCCGGCGGU
.....((((..(((((..........)))))..))))..(((...((..(((((((((((......)))))))))))(((((......))))))).)))... (-29.45 = -30.23 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:51 2006