| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,724,153 – 20,724,293 |
| Length | 140 |
| Max. P | 0.979162 |
| Location | 20,724,153 – 20,724,253 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -29.53 |
| Consensus MFE | -28.91 |
| Energy contribution | -28.47 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20724153 100 + 22224390 CUUGCAAGUGCCUGCCACGCCCCAUUUGAAAUGGAAAUGUUCUCAGCCAUUUUAUAUUGUGUUUAAUACAUUCUAAAGGAGUGGGAACGCAGGCGAAUGG ....((..(((((((.....((((((((((((((...((....)).))))))).((..((((.....))))..))...)))))))...)))))))..)). ( -30.50) >DroSec_CAF1 31999 100 + 1 CUUGCAAGUGCCUGCCACGCCCCAUUUAAAAUGGAAAUGUUCUCAGCCAUUUUAUAUUGUGUUUAAUACAUUCCAAAGGAGUGGGAACGCAGGCGAAUGG ....((..(((((((.....(((((((....(((((.(((....(((((........)).)))....))))))))...)))))))...)))))))..)). ( -31.00) >DroYak_CAF1 32098 100 + 1 CUUGCAAGUGCCUGCCACGCCCCAUUUAAAAUGGAAAUGUUCUCAGCCAUUUUAUAUUGUGUUUAAUACUUUUUAAAGGAGUGGGAACGUAGGCGAAUGG ....((..(((((((.....((((((((((((((...((....)).)))))))........(((((......))))).)))))))...)))))))..)). ( -27.10) >consensus CUUGCAAGUGCCUGCCACGCCCCAUUUAAAAUGGAAAUGUUCUCAGCCAUUUUAUAUUGUGUUUAAUACAUUCUAAAGGAGUGGGAACGCAGGCGAAUGG ....((..(((((((.....((((((((((((((...((....)).))))))).(((((....)))))..........)))))))...)))))))..)). (-28.91 = -28.47 + -0.44)
| Location | 20,724,178 – 20,724,293 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 95.36 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -25.79 |
| Energy contribution | -25.80 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20724178 115 + 22224390 UUGAAAUGGAAAUGUUCUCAGCCAUUUUAUAUUGUGUUUAAUACAUUCUAAAGGAGUGGGAACGCAGGCGAAUGGCUUUCAAUGAGAAAUUUUCAACAAUCAAAAAAAUUACACA ((((..(((((((.(((((((((((((....((((((((....(((((.....))))).))))))))..)))))))......)))))))))))))....))))............ ( -31.90) >DroSec_CAF1 32024 115 + 1 UUAAAAUGGAAAUGUUCUCAGCCAUUUUAUAUUGUGUUUAAUACAUUCCAAAGGAGUGGGAACGCAGGCGAAUGGCUUUCAAUGAGAAAUUUUUAAAAAUCAAAAAAAUUACACA ......(((((((.(((((((((((((....((((((((....((((((...)))))).))))))))..)))))))......))))))))))))).................... ( -30.50) >DroYak_CAF1 32123 115 + 1 UUAAAAUGGAAAUGUUCUCAGCCAUUUUAUAUUGUGUUUAAUACUUUUUAAAGGAGUGGGAACGUAGGCGAAUGGCUUUCAAUGAAAAAUUUUCAACAAUCAAAAAAAUUACACA ......(((((((.(((..((((((((....((((((((..((((((.....)))))).))))))))..))))))))......)))..))))))).................... ( -20.10) >consensus UUAAAAUGGAAAUGUUCUCAGCCAUUUUAUAUUGUGUUUAAUACAUUCUAAAGGAGUGGGAACGCAGGCGAAUGGCUUUCAAUGAGAAAUUUUCAACAAUCAAAAAAAUUACACA ......(((((((.(((((((((((((....((((((((....(((((.....))))).))))))))..)))))))......))))))))))))).................... (-25.79 = -25.80 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:48 2006