Locus 8349

Sequence ID X_DroMel_CAF1
Location 20,723,175 – 20,723,295
Length 120
Max. P 0.915064
window13710

overview

Window 0

Location 20,723,175 – 20,723,295
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.50
Mean single sequence MFE -38.33
Consensus MFE -32.54
Energy contribution -32.77
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -2.88
Structure conservation index 0.85
SVM decision value 1.10
SVM RNA-class probability 0.915064
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20723175 120 + 22224390
GUGUUGGGGCUAAGGUUGGGGAAAUACAAAAAAAAAAUGACCUGGCCAAAGGGGCAAAUGCAUUUCACUUGAAAGGCUUUUGACCGGGCUCCUCCCCAGAAGCGAGCGCAAAACACAUUA
(((((..((((....(((((((....((.........))....((((...((..((((.((.((((....)))).)).)))).)).))))..))))))).....))).)..))))).... ( -36.90)
>DroSec_CAF1 31018 118 + 1
GUGUUGGGGCUAAGGUUGGGGAAAUA--AAAAAAAAAUGGCCUGGCCAAAGGAGCAAAUGCAUUUCACUUGAAAGGCUUUUGACCGGGCUCCUCCCCAGAAGCGAGCGCAAAACACAUUA
(((((..((((....(((((((....--..........(((((((.((((((.((....)).((((....))))..)))))).)))))))..))))))).....))).)..))))).... ( -40.59)
>DroYak_CAF1 31072 119 + 1
GUGUUGGGGCUAAGGCUGGGGCAAUAUA-AAAAAAAAUGACCUGUCCAAAGGGGCAAAUGCAUUUCACUUGAAAGGCUUUUGACCAGACUUCUUCCCAGCAGCGAGCGCAAAACACAUUA
(((((..((((...(((((((.......-...........(((......)))((((((.((.((((....)))).)).)))).))........)))))))....))).)..))))).... ( -37.50)
>consensus
GUGUUGGGGCUAAGGUUGGGGAAAUA_AAAAAAAAAAUGACCUGGCCAAAGGGGCAAAUGCAUUUCACUUGAAAGGCUUUUGACCGGGCUCCUCCCCAGAAGCGAGCGCAAAACACAUUA
(((((..((((....(((((((..................(((......)))((((((.((.((((....)))).)).)))).)).......))))))).....))).)..))))).... (-32.54 = -32.77 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:46 2006