Locus 8348

Sequence ID X_DroMel_CAF1
Location 20,720,676 – 20,720,774
Length 98
Max. P 0.651075
window13709

overview

Window 9

Location 20,720,676 – 20,720,774
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 93.20
Mean single sequence MFE -23.63
Consensus MFE -22.56
Energy contribution -22.57
Covariance contribution 0.01
Combinations/Pair 1.10
Mean z-score -1.55
Structure conservation index 0.95
SVM decision value 0.25
SVM RNA-class probability 0.651075
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20720676 98 + 22224390
AAAAGCAUCGUUAAAUAAACAUGAGGAUAUGGAUGUAUGAUUGCCCCAGACUCUCCAGGCUUGAAUUUCCAAGAACAUCGAGAACCUCCGGCAGAUGC
....(((((((((.(((..((((....))))..))).))))((((..((..((((....((((......))))......))))..))..))))))))) ( -22.30)
>DroSec_CAF1 28584 98 + 1
AAAAGCAUCGUUAAAUAAACAUGAGGAUAUGGAUGUAUGAUUGCCCCAGACUCUCCAGGCUUGAAUUUUCAAGAACAGCGAGAAUCUCCGGCAGAUGC
....(((((((((.(((..((((....))))..))).))))((((..(((.(((((...(((((....)))))....).)))).)))..))))))))) ( -26.00)
>DroYak_CAF1 28586 98 + 1
AAAAGCAUCAUUAAAUAAACAUGAGGACAUGGAUGUAUGAUUGCCCCAGACUUCCCACUCUUGAAUCUCCAAGAACAUCGAGAAUCUCCGGCAGAUGC
....(((((((((.(((..((((....))))..))).))))((((..((((((.....(((((......))))).....)))..)))..))))))))) ( -22.60)
>consensus
AAAAGCAUCGUUAAAUAAACAUGAGGAUAUGGAUGUAUGAUUGCCCCAGACUCUCCAGGCUUGAAUUUCCAAGAACAUCGAGAAUCUCCGGCAGAUGC
....(((((((((.(((..((((....))))..))).))))((((..(((.((((....((((......))))......)))).)))..))))))))) (-22.56 = -22.57 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:45 2006