Locus 8346

Sequence ID X_DroMel_CAF1
Location 20,707,879 – 20,707,986
Length 107
Max. P 0.560062
window13706

overview

Window 6

Location 20,707,879 – 20,707,986
Length 107
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 90.40
Mean single sequence MFE -32.40
Consensus MFE -25.99
Energy contribution -25.67
Covariance contribution -0.32
Combinations/Pair 1.21
Mean z-score -2.03
Structure conservation index 0.80
SVM decision value 0.05
SVM RNA-class probability 0.560062
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20707879 107 - 22224390
GAAUAUGUACGUGUACAGUGGGUUUCGGGAGUGUAAGGCGGUUGCCGGUUGGACAUUCCUCGGACCAAGUCAUGCUUAGGAAGUACACUAAGCAAAA-AAGCGGAAAU
.........(((........((((..((((((((.((.(((...))).))..))))))))..))))......(((((((........)))))))...-..)))..... ( -33.20)
>DroSec_CAF1 15535 108 - 1
GAAUAUGCACGUGUACAGUGCGGUUCGGGAAUGUAAGGCGGUUGCCGGUUGGACAUUCCUCGGACCAAGUCAUGCUUAGGAAUUACACUAAGCAAAAUAAGCGGAAAU
......((((.......))))(((((((((((((.((.(((...))).))..))))))).))))))......(((((((........))))))).............. ( -38.90)
>DroYak_CAF1 15226 107 - 1
GAAUAUGCACGUGUACAGUGGGUUUCGGGAGUGUAAGGUGGUUGUCGGUUGGACAUUCCUCAGACCAAGUCGUGCUUAGAAAAUACAGUAAGCAAAA-UAGUGGAAAA
.....(.(((..........(((((.((((((((.((.((.....)).))..)))))))).)))))..((..((((((..........))))))..)-).))).)... ( -25.10)
>consensus
GAAUAUGCACGUGUACAGUGGGUUUCGGGAGUGUAAGGCGGUUGCCGGUUGGACAUUCCUCGGACCAAGUCAUGCUUAGGAAAUACACUAAGCAAAA_AAGCGGAAAU
.....(((............(((((.((((((((.((.(((...))).))..)))))))).)))))......(((((((........)))))))......)))..... (-25.99 = -25.67 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:42 2006