| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,707,345 – 20,707,462 |
| Length | 117 |
| Max. P | 0.951668 |
| Location | 20,707,345 – 20,707,462 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.52 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -23.86 |
| Energy contribution | -23.20 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.951668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20707345 117 + 22224390 --CUUCUGCGUAAAUUGCGUAGCGAUUGUAUAACGUU-UGGCCAAAAAACCAAAUCGAAUAUGCCCAUUUUGGCCAAAUCCAAUGGCCAUCAAAGUAUAAUAACCAACAAACCGAAAUCG --...((((((.....))))))(((((......((((-(((........))))).))..(((((......((((((.......)))))).....)))))................))))) ( -25.90) >DroSec_CAF1 14968 117 + 1 --CUUCUACGCAAAUUGCGUAGCGAUUGUAUAACGUU-UGGCCAAAAAACCAAAUCGAAUAUGCCCAUUCUGGCCAAAUCCAAUGGCCAUCAAAGUAUAAUAACCAACAAACCGAAAUCG --...((((((.....))))))(((((......((((-(((........))))).))..(((((......((((((.......)))))).....)))))................))))) ( -27.40) >DroYak_CAF1 14674 120 + 1 CUCUUCUGUGCAAAUUGCGUAGCGAUUGUAUAACGUUUUGGCCAAAAAACCAAAUCGAAUAUGCCCAUUUUGGCCAAAUCCAAUGGCCAUCAAAGUAUAAUAACCAACAAACCGAAAUCA ...((((((((((.((((...))))))))))).((.(((((........))))).))..(((((......((((((.......)))))).....)))))..............))).... ( -24.90) >consensus __CUUCUGCGCAAAUUGCGUAGCGAUUGUAUAACGUU_UGGCCAAAAAACCAAAUCGAAUAUGCCCAUUUUGGCCAAAUCCAAUGGCCAUCAAAGUAUAAUAACCAACAAACCGAAAUCG .....((((((.....)))))).((((......((...(((........)))...))..(((((......((((((.......)))))).....)))))................)))). (-23.86 = -23.20 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:41 2006