| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,706,254 – 20,706,359 |
| Length | 105 |
| Max. P | 0.633950 |
| Location | 20,706,254 – 20,706,359 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.64 |
| Mean single sequence MFE | -16.09 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20706254 105 - 22224390 CCCAGGCCGUCACAGCUUU---UCCUCGACU---UCCUUCUCCAAAGCCGGAAAGUGAAAAAUCCCAAACGGAAAUACAUUCAUUUGCUUGUUUUACUUUUCCAAUUUCAA ...(((..(((........---.....))).---.)))...........(((((((((((.....((((.(((......))).))))....)))))))))))......... ( -15.52) >DroPse_CAF1 53725 97 - 1 --------------ACUUUUGCUCCUCCACAUGGUGCCUCUGCGAAACCGGAAAGUGAAAAAUCCCAAACGGAAAUACAUUCAUUUGCUUGUUUUACUUUUCCAAUUUCAA --------------......((.((.......)).))......((((..(((((((((((.....((((.(((......))).))))....)))))).)))))..)))).. ( -18.10) >DroGri_CAF1 50093 88 - 1 --------------ACUUU---U---CAGCA---CGCUGCCUCAAAGCCGGAAAGUGAAAAAUCCCAAACGGAAAUACAUUCAUUUGCUUGUUUUACUUUUCCAAUUCCAA --------------.....---.---.....---.(((.......))).(((((((((((.....((((.(((......))).))))....)))))))))))......... ( -14.20) >DroSec_CAF1 13942 105 - 1 CCCAGGCCGUCACAGCUUU---UCCUCGACU---UCCUUCUCCAAAGCCGGAAAGUGAAAAAUCCCAAACGGAAAUACAUUCAUUUGCUUGUUUUACUUUUCCAAUUUCAA ...(((..(((........---.....))).---.)))...........(((((((((((.....((((.(((......))).))))....)))))))))))......... ( -15.52) >DroMoj_CAF1 69543 87 - 1 --------------ACUUU---U---CAGCA---CGCUGCGACACAGCCGGAAAGUGAAAAAUCCCAAACGGAAAUACAUUCAUUUGCUUGUUUUACUUUUCCAAUUCGA- --------------.....---.---.....---.((((.....)))).(((((((((((.....((((.(((......))).))))....)))))))))))........- ( -16.30) >DroPer_CAF1 56567 97 - 1 --------------ACUUUUGCUCCUCCACAUGGUCCCUCUGCGAAACCGGAAAGUGAAAAAUCCCAAACGGAAAUACAUUCAUUUGCUUGUUUUACUUUUCCAAUUUCAA --------------..((((((....((....)).......))))))..(((((((((((.....((((.(((......))).))))....)))))))))))......... ( -16.90) >consensus ______________ACUUU___UCCUCAACA___UCCUUCUCCAAAGCCGGAAAGUGAAAAAUCCCAAACGGAAAUACAUUCAUUUGCUUGUUUUACUUUUCCAAUUUCAA .................................................(((((((((((.....((((.(((......))).))))....)))))))))))......... (-12.10 = -12.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:40 2006