Locus 8343

Sequence ID X_DroMel_CAF1
Location 20,702,686 – 20,702,778
Length 92
Max. P 0.925541
window13703

overview

Window 3

Location 20,702,686 – 20,702,778
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 98.55
Mean single sequence MFE -27.03
Consensus MFE -25.39
Energy contribution -25.50
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.44
Structure conservation index 0.94
SVM decision value 1.17
SVM RNA-class probability 0.925541
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20702686 92 - 22224390
UCAGCCAUUCAGUGAAGAGGGGAAAACUUUUCAUUUGGCUGUCGGCGUAAAAAGGCCAACGGAAAAUCGGGAAAGCCGAGGAAAGCACAAUU
.((((((...(((((((((.......)))))))))))))))..(((........))).........((((.....))))............. ( -26.60)
>DroSec_CAF1 10395 92 - 1
UCAGCCAUUCAGUGAAGAGGGGAAAACUUUUCAUUUGGCUCUCGGCGCAAAAAGGCCAACGGAAAAUCGGGAAAGCCGAGGAAAGCACAAUU
..(((((...(((((((((.......))))))))))))))((((((((......))...((......)).....))))))............ ( -27.30)
>DroYak_CAF1 10358 92 - 1
UCAGCCAUUCAGUGAAGAGGGGAAAACUUUUCAUUUGGCUGUCGGCGCAAAAAGGCCAACGGAAAAUCGGGAAAGCCGAGGAAAGCACAAUU
.((((((...(((((((((.......)))))))))))))))(((((((......))...((......)).....)))))............. ( -27.20)
>consensus
UCAGCCAUUCAGUGAAGAGGGGAAAACUUUUCAUUUGGCUGUCGGCGCAAAAAGGCCAACGGAAAAUCGGGAAAGCCGAGGAAAGCACAAUU
.((((((...(((((((((.......)))))))))))))))(((((((......))...((......)).....)))))............. (-25.39 = -25.50 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:39 2006