Locus 8342

Sequence ID X_DroMel_CAF1
Location 20,702,325 – 20,702,423
Length 98
Max. P 0.621553
window13702

overview

Window 2

Location 20,702,325 – 20,702,423
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 97.28
Mean single sequence MFE -27.10
Consensus MFE -26.54
Energy contribution -26.10
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.52
Structure conservation index 0.98
SVM decision value 0.18
SVM RNA-class probability 0.621553
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20702325 98 + 22224390
CACCCAAGUCCAGGACAUCGGGACAUCCCGCCAAAUCCCUCUCUUUCCUCGAUUGUUUGAGCUUUAAACAAACAAAGGCGGCGAUGGAAGGGAUAACU
..(((..((((..(....).))))((((((((.........((.......))(((((((.........))))))).))))).)))....)))...... ( -26.70)
>DroSec_CAF1 10040 98 + 1
CACCCAAGUCCAGGACAUCGGGACAUCCCGCCAAAUCCCUCUCCUUCCUCGAUUGUUUGAGCUUUAAACAAACAAAGGCGGCGAUGGAAGGGAUAACU
............((....((((....))))))..((((((.(((.((.(((.(((((((.........)))))))...))).)).))))))))).... ( -28.20)
>DroYak_CAF1 9932 98 + 1
CGCCCAAGUCCAGGACAUCGGGACAUCCCGCCAAAUCCUUCUCUUUCCUCGAUUGUUUGAGCUUUAAACAAACAAAGGCGGCGAUGGAAGGGAUAAAU
..(((..((((..(....).))))((((((((.........((.......))(((((((.........))))))).))))).)))....)))...... ( -26.40)
>consensus
CACCCAAGUCCAGGACAUCGGGACAUCCCGCCAAAUCCCUCUCUUUCCUCGAUUGUUUGAGCUUUAAACAAACAAAGGCGGCGAUGGAAGGGAUAACU
............((....((((....))))))..((((((.(((.((.(((.(((((((.........)))))))...))).)).))))))))).... (-26.54 = -26.10 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:38 2006