Locus 8341

Sequence ID X_DroMel_CAF1
Location 20,695,563 – 20,695,665
Length 102
Max. P 0.941669
window13701

overview

Window 1

Location 20,695,563 – 20,695,665
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 96.08
Mean single sequence MFE -35.37
Consensus MFE -34.24
Energy contribution -33.80
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -2.25
Structure conservation index 0.97
SVM decision value 1.32
SVM RNA-class probability 0.941669
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20695563 102 - 22224390
GAAACUAUACGCUCGGGGAUUUAGUUUCUGGUACCUUUUUGUGCGUUAUCUGCUUGAUUUUGCAUGCGGAGGCAGAAGAGUGCCGAGCGGCGAUAGGGAUUU
....((((.(((((((.(......((((((...((((..((((((..(((.....)))..))))))..))))))))))..).)))))))...))))...... ( -36.60)
>DroSec_CAF1 3743 102 - 1
GAAACUAUGCGCUCGGGGAUUUCGUUUCUGGUACCUUUUUGUGCGUUAUCUGCAUGAUUUUGCAUGCGGAGGCAGAAGAGUGCCGAGUGGCGAUAGGGACUU
....((((((((((((..((...))..))(((((..((((.(((....((((((((......)))))))).))).))))))))))))).)).))))...... ( -35.00)
>DroYak_CAF1 2967 102 - 1
GAAACUAUGCGCUUGGGGAUUUAGUUUCUGGUACCUUUUUGUGCGUUAUCUGCAUGAUUUUGCAUGCGGAGGCAGAAGAGUGCCGAGCGGCGAUAGGGACUU
....((((((((((((.(......((((((((((......))))....((((((((......))))))))..))))))..).)))))).)).))))...... ( -34.50)
>consensus
GAAACUAUGCGCUCGGGGAUUUAGUUUCUGGUACCUUUUUGUGCGUUAUCUGCAUGAUUUUGCAUGCGGAGGCAGAAGAGUGCCGAGCGGCGAUAGGGACUU
....((((.(((((((.(......((((((...((((..((((((..(((.....)))..))))))..))))))))))..).)))))))...))))...... (-34.24 = -33.80 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:37 2006