Locus 834

Sequence ID X_DroMel_CAF1
Location 2,327,917 – 2,328,008
Length 91
Max. P 0.921142
window1348

overview

Window 8

Location 2,327,917 – 2,328,008
Length 91
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 90.45
Mean single sequence MFE -17.85
Consensus MFE -14.27
Energy contribution -14.53
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.31
Structure conservation index 0.80
SVM decision value 1.14
SVM RNA-class probability 0.921142
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2327917 91 - 22224390
UUAUCUAUAGGUAGAAAACUCUUGCAUAGAUAGGUAGUUCAACGUAACCAUAUCCUAUAGGAAAAACCCUUAAAACAGAUAUCUGUGCA---AU
...((((....))))......((((((((((((((.(.....)...)))...(((....))).................))))))))))---). ( -19.20)
>DroSec_CAF1 26093 89 - 1
UUAUCUAUAGGUAGAAAACUCUUGCAUAGAUAGGUAGUUCAA-----ACAUAUCCUAUAGGAAAAACCCUUAAAACAUAUAUCUGUGCAUAUAU
...((((....)))).......((((((((((.((.((....-----))...(((....)))............))...))))))))))..... ( -16.70)
>DroEre_CAF1 28272 91 - 1
UUAUCUAUAGGUAGAAAACUCUUGCAUAGAUAGGUAGUUCAACGUAAACAUAUCCUAUAGGAAAAACCCUUAAAACAAAUAUCUGUGCA---AU
...((((....))))......(((((((((((.((.(((.......)))...(((....)))............))...))))))))))---). ( -18.00)
>DroYak_CAF1 28214 87 - 1
UUAUCUAUAGGUAGAAAACUCUUGCAUAGAU----AGUUCAACGUAAACACAUCCUAUAGGAAAAACCCUUAAAACGGAUAUCUGUGCA---CU
...((((....)))).......(((((((((----((((.......)))...(((...(((......)))......)))))))))))))---.. ( -17.50)
>consensus
UUAUCUAUAGGUAGAAAACUCUUGCAUAGAUAGGUAGUUCAACGUAAACAUAUCCUAUAGGAAAAACCCUUAAAACAGAUAUCUGUGCA___AU
...((((....)))).......((((((((((....(((.............(((....)))...........)))...))))))))))..... (-14.27 = -14.53 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:54 2006