Locus 8339

Sequence ID X_DroMel_CAF1
Location 20,688,301 – 20,688,402
Length 101
Max. P 0.581413
window13699

overview

Window 9

Location 20,688,301 – 20,688,402
Length 101
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 78.88
Mean single sequence MFE -22.20
Consensus MFE -14.99
Energy contribution -16.18
Covariance contribution 1.19
Combinations/Pair 1.15
Mean z-score -1.61
Structure conservation index 0.68
SVM decision value 0.10
SVM RNA-class probability 0.581413
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20688301 101 - 22224390
CUUGCCGUUUAUGUAAUUGACUUCAUUGCCAACCAUCGAUUCAAGUACAAGAGCAGUCUUC---------------UUCCUUUGUGCCCAUCACUUGGGCUUUCUGUCGCUUUUUC----
...((.((((.((((.((((..((..((.....))..)).)))).)))).)))).......---------------.........(((((.....)))))........))......---- ( -19.40)
>DroEre_CAF1 83795 101 - 1
CUUGCCGUUUAUGUAAUUGACUUCAUUGCCAACAAUCGAUUCAAGUACAAAAGCAGCCUUC---------------UUCGUUUGUGCCCAUCACUUGGGCUUUCUGGCGCUUUUUC----
...(((((((.((((.((((.((.((((....)))).)).)))).)))).)))).......---------------.........(((((.....))))).....)))........---- ( -25.40)
>DroYak_CAF1 85250 100 - 1
CUUGCCGUUUAUGUAAUUGACUUCAUUGCCAACAAUCGAUUCAAGUACAAAAGCAGCCUUC---------------UUCCUUUGUGCCCAUCACUUGGGCUUCCUGGCACUU-UUC----
..((((((((.((((.((((.((.((((....)))).)).)))).)))).)))).......---------------.........(((((.....))))).....))))...-...---- ( -26.00)
>DroAna_CAF1 59596 116 - 1
CAUACCGUUUAUGUAAUUGACUUCAUUGCCAACAAUCGAUUUGAGUAGAAAAGCCGCCUGCCGCCUGCCGCCUGGCCUCCUUUGUCCCUUUCA----GCAUCCUUGGCACUUUUUCUUUC
..........................((((((.....((((((((..((((((..(((.((.(....).))..)))...)))).))...))))----).))).))))))........... ( -18.00)
>consensus
CUUGCCGUUUAUGUAAUUGACUUCAUUGCCAACAAUCGAUUCAAGUACAAAAGCAGCCUUC_______________UUCCUUUGUGCCCAUCACUUGGGCUUCCUGGCACUUUUUC____
..((((((((.((((.((((.((.((((....)))).)).)))).)))).))))...............................(((((.....))))).....))))........... (-14.99 = -16.18 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:35 2006