| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,687,288 – 20,687,404 |
| Length | 116 |
| Max. P | 0.794996 |
| Location | 20,687,288 – 20,687,404 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.67 |
| Mean single sequence MFE | -33.67 |
| Consensus MFE | -24.22 |
| Energy contribution | -24.67 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20687288 116 + 22224390 AUCUAGGACUU-GUGCACGCGUUGUGAACUCACAUUUCCAGGGUAACUCGCUGGUCGAC-CUUUGUCGCAUAAACAGCGCCUAUCUAAGUCCUUCUCCUGCCUGCCCCCAUAUAUUUA ....(((((((-(.....(((((((............((((.(.....).)))).((((-....)))).....))))))).....))))))))......................... ( -28.20) >DroEre_CAF1 82788 116 + 1 AUGUACUACUU-UUGCUGGCGGCGCAAGCUCUCAUUUCCAGGGUAUCUCGCUGGUCGAC-UCCGGUCGCAUAACCAGCGGCUAUCUAAGUCCUUCUCCUGCCUGCACCCAUGUAUUUA ..((((.....-.(((.((((((....)))..........(((((.(.(((((((((((-....))))....)))))))).))))).............))).))).....))))... ( -35.30) >DroYak_CAF1 84240 117 + 1 AUGUACUAUGUAAUGCAGGCGGUGGCAACUCACAUUUCCAGGGUAUCUUGCUGGUCGACCUGUGGUCGCACAACCAGCAGCUAUCUAAGUCCUUCUCCUGCCUGC-CCCAUAUAUUUA ......(((((...((((((((((((.((((.........))))....((((((((((((...)))))....)))))))))))))..((........))))))))-...))))).... ( -37.50) >consensus AUGUACUACUU_AUGCAGGCGGUGCAAACUCACAUUUCCAGGGUAUCUCGCUGGUCGAC_UCUGGUCGCAUAACCAGCGGCUAUCUAAGUCCUUCUCCUGCCUGC_CCCAUAUAUUUA ..............(((((((((....)))..........(((((...(((((((((((.....))))....)))))))..))))).............))))))............. (-24.22 = -24.67 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:35 2006