Locus 8335

Sequence ID X_DroMel_CAF1
Location 20,684,271 – 20,684,377
Length 106
Max. P 0.699241
window13692

overview

Window 2

Location 20,684,271 – 20,684,377
Length 106
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 70.61
Mean single sequence MFE -26.10
Consensus MFE -15.11
Energy contribution -16.24
Covariance contribution 1.13
Combinations/Pair 1.18
Mean z-score -1.56
Structure conservation index 0.58
SVM decision value 0.35
SVM RNA-class probability 0.699241
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20684271 106 + 22224390
----------UAGAUAAGUUCAGGAAGCGAAAGAGAGCGCAC-AGACGGACGGCCAAUGAUUGAUUAAGUCCGGAUUUUCCCAGGGAAAUGC---GGGGGAAGGCCGGGAAAAGUCAAGU
----------..(((...(((.....(((........)))..-.......((((((((.....)))...((((.((((((....)))))).)---)))....))))).)))..))).... ( -27.70)
>DroEre_CAF1 80748 108 + 1
----------UAGAUAAGUUCAGGAAGCGAAAGAGAGCGCAAAAGGCGGAGGGCCAAUGAUUGAUUAAGUCCGGAUUUUCCACUGGA--CGCGACGGGGGAAAGCCGUGAAAAGUCAAGA
----------.........(((....(((........)))....(((.....)))..)))((((((...(((((.((((((.(((..--.....))).))))))))).))..)))))).. ( -28.20)
>DroYak_CAF1 82248 109 + 1
----------UAGAUAAGUUCAGGAAGCGAACGAGAGCGCAA-AGGCGGGGUGCCAAUGAUUGAUUAAGUCCGGAUUUUCCCAGGGAAGCGCGGGGGGGGAAAGCCGGGAAAAGUCAAGU
----------.........(((....(((..(....))))..-.(((.....)))..)))((((((...(((((.(((((((.((....).)....))))))).)))))...)))))).. ( -30.40)
>DroAna_CAF1 56379 110 + 1
GUGAAUAAAAAAAAAAAGAAAAGAAAAAGUGGGAAAAUGGAA-AAUGGGAAGGCCAAUGAUUGAUUAAGCCCGGCUUUUGCCG-GAAAACUC---AAGUCAA----GGGAGAAGUCAUG-
..........................................-.((((.....((..(((((........(((((....))))-).......---.))))).----.)).....)))).- ( -18.09)
>consensus
__________UAGAUAAGUUCAGGAAGCGAAAGAGAGCGCAA_AGGCGGAGGGCCAAUGAUUGAUUAAGUCCGGAUUUUCCCAGGGAAACGC___GGGGGAAAGCCGGGAAAAGUCAAGU
..........................(((........))).......((....)).....((((((...(((((.((((((................)))))).)))))...)))))).. (-15.11 = -16.24 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:29 2006