Locus 8334

Sequence ID X_DroMel_CAF1
Location 20,683,139 – 20,683,230
Length 91
Max. P 0.735919
window13690 window13691

overview

Window 0

Location 20,683,139 – 20,683,230
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 93.77
Mean single sequence MFE -27.31
Consensus MFE -25.10
Energy contribution -25.43
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.92
SVM decision value 0.44
SVM RNA-class probability 0.735919
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20683139 91 + 22224390
GUCAGCAUGUCAGAGCCCCCAACACGUUGCAAAAUGCGCUUACACACAUGUAAGCACAUGUUGGGGCAGAAAACGCAGCUAGAGUCGCCCU
.(((((.(((......((((((((.((.((.....))(((((((....))))))))).))))))))........)))))).))........ ( -28.44)
>DroEre_CAF1 79643 91 + 1
GUCAGCAUGUCAGAGCCCCCAAUACGUUGCAAAAUGCGCUUACACACAUGUAAGCACAUGUUGGUUAGGAAAACGCGGCUAAAGUCGCCCU
.(((((((((..................((.....))(((((((....))))))))))))))))..........(((((....)))))... ( -26.60)
>DroYak_CAF1 81085 91 + 1
GUCAGCAUGUCAGAGCCCCUAACACGUUGCAAAAUGCGCUUACACACAUGUAAGCACAUGUUGGGAAGGAAAACGCGGCUAAAGUCGCCCU
.(((((((((..................((.....))(((((((....))))))))))))))))..(((.....(((((....)))))))) ( -26.90)
>consensus
GUCAGCAUGUCAGAGCCCCCAACACGUUGCAAAAUGCGCUUACACACAUGUAAGCACAUGUUGGGAAGGAAAACGCGGCUAAAGUCGCCCU
.(((((((((..................((.....))(((((((....))))))))))))))))..........(((((....)))))... (-25.10 = -25.43 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 20,683,139 – 20,683,230
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 93.77
Mean single sequence MFE -30.97
Consensus MFE -28.41
Energy contribution -28.30
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.86
Structure conservation index 0.92
SVM decision value 0.41
SVM RNA-class probability 0.725686
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20683139 91 - 22224390
AGGGCGACUCUAGCUGCGUUUUCUGCCCCAACAUGUGCUUACAUGUGUGUAAGCGCAUUUUGCAACGUGUUGGGGGCUCUGACAUGCUGAC
((((((((.(.....).))).....((((((((((((((((((....)))))))((.....)).))))))))))))))))........... ( -36.10)
>DroEre_CAF1 79643 91 - 1
AGGGCGACUUUAGCCGCGUUUUCCUAACCAACAUGUGCUUACAUGUGUGUAAGCGCAUUUUGCAACGUAUUGGGGGCUCUGACAUGCUGAC
..((((.....((((.((((.....)))(((.(((((((((((....))))))))))).)))..........).))))......))))... ( -26.10)
>DroYak_CAF1 81085 91 - 1
AGGGCGACUUUAGCCGCGUUUUCCUUCCCAACAUGUGCUUACAUGUGUGUAAGCGCAUUUUGCAACGUGUUAGGGGCUCUGACAUGCUGAC
..(((.......)))((((.((...((((((((((((((((((....)))))))((.....)).))))))).))))....)).)))).... ( -30.70)
>consensus
AGGGCGACUUUAGCCGCGUUUUCCUACCCAACAUGUGCUUACAUGUGUGUAAGCGCAUUUUGCAACGUGUUGGGGGCUCUGACAUGCUGAC
(((((..(((((((.(((((........(((.(((((((((((....))))))))))).))).)))))))))))))))))........... (-28.41 = -28.30 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:29 2006