| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,682,037 – 20,682,127 |
| Length | 90 |
| Max. P | 0.797106 |
| Location | 20,682,037 – 20,682,127 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 82.72 |
| Mean single sequence MFE | -22.97 |
| Consensus MFE | -21.21 |
| Energy contribution | -20.99 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.797106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20682037 90 - 22224390 UGCACUUUUGUCGACUCAUUCGAUGCUGAAUCCUUCGGCUUAAGCGCGUUCAGCUUGUUAAAUGCGCUGCUGGCAAAUUGCAUUCCCC--------------AU------ ((((..(((((((...........(((((.....)))))...((((((((.((....)).))))))))..))))))).))))......--------------..------ ( -25.50) >DroEre_CAF1 78444 104 - 1 UGCACCUUUGUCGACUCAUUCGCUGCUGAAUCCUUCGGCUUAAGCGCUUUCAGCUUGUUAAAUGCGCUGCUGGCAAAUUGCAUUCCCCAUUCCACAUUCCCCAU------ ((((..((((((((.....))((.(((((.....)))))...(((((................))))))).)))))).))))......................------ ( -21.49) >DroYak_CAF1 79877 110 - 1 UGCACCUUUGUCGACUCACUCGAUGCUGAAUCCUUCGGCUUAAGCGCUUUCAGUUUGUUAAAUGCGCUGCUGGCGAAUUGCAUUCCCCCUUCCCCAUUCCCCGUCGCCCG .((......(((((.....)))))(((((.....)))))...(((((................))))))).(((((...........................))))).. ( -21.92) >consensus UGCACCUUUGUCGACUCAUUCGAUGCUGAAUCCUUCGGCUUAAGCGCUUUCAGCUUGUUAAAUGCGCUGCUGGCAAAUUGCAUUCCCC_UUCC_CAUUCCCCAU______ ((((..(((((((...........(((((.....)))))...(((((................)))))..))))))).))))............................ (-21.21 = -20.99 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:27 2006