Locus 8332

Sequence ID X_DroMel_CAF1
Location 20,681,804 – 20,681,899
Length 95
Max. P 0.595211
window13688

overview

Window 8

Location 20,681,804 – 20,681,899
Length 95
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 81.49
Mean single sequence MFE -25.83
Consensus MFE -17.73
Energy contribution -18.40
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.69
SVM decision value 0.12
SVM RNA-class probability 0.595211
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20681804 95 + 22224390
UCGCCUGAAAUUUUGUUCGCUUGCUGAAUGCUCAGUGUAUGCUGUAUGAUAAUAUUACU---GCGAGUGACACUCGCACACAUGGCGUAUACGCAAUG
..((.(((.((((.((......)).))))..)))(((((((((((.((..........(---(((((.....)))))))).))))))))))))).... ( -25.70)
>DroEre_CAF1 78212 88 + 1
----------UUGCGUUUGCGAGCUGAAUGCUCAGUGUAUGCUGCAUGAUAAUAUUACUGCUGCGAGUGACAGUCGCACACAUGGCGUAUACGCAAUG
----------((((((.(((((((.....)))).((((.(((.(((((((...)))).))).))).(((.....))))))).....))).)))))).. ( -28.40)
>DroYak_CAF1 79643 81 + 1
----------UACAGUUUG----CCGAAUGCUCAGUGUAUGCUGUAUGAUAAUAUUACU---GCGAGUGACACUCGCACACAUGGCGUAUACGCAAUG
----------......(((----(.((....)).(((((((((((.((..........(---(((((.....)))))))).))))))))))))))).. ( -23.40)
>consensus
__________UUCAGUUUGC__GCUGAAUGCUCAGUGUAUGCUGUAUGAUAAUAUUACU___GCGAGUGACACUCGCACACAUGGCGUAUACGCAAUG
............................(((...(((((((((((.(((......)......(((((.....))))).)).))))))))))))))... (-17.73 = -18.40 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:26 2006