Locus 8331

Sequence ID X_DroMel_CAF1
Location 20,677,252 – 20,677,371
Length 119
Max. P 0.690632
window13687

overview

Window 7

Location 20,677,252 – 20,677,371
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.47
Mean single sequence MFE -31.40
Consensus MFE -19.66
Energy contribution -21.85
Covariance contribution 2.19
Combinations/Pair 1.09
Mean z-score -1.87
Structure conservation index 0.63
SVM decision value 0.33
SVM RNA-class probability 0.690632
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20677252 119 + 22224390
GGAAAACAGCAACUUUCCCGGGCAAAAAAUUGUCAAAGGCA-ACGGCCAAAAAUGGAACUCUGGCAACAGCCAUUUCUGCCAAUUUGUGUGCAAUUUAAAGUGUCCGAAGGGGGACCCUG
(((((........)))))((((((..((((((((((((...-.)(((...((((((....(((....)))))))))..)))..))))...)))))))....))))))..((....))... ( -36.90)
>DroEre_CAF1 73666 118 + 1
GGAAAACAGCAACUUUUGCGGACAAAAAAUUGUCAAAGGCA-ACGGCCAAAAAUGGAACUCUGGCAACAGCCAUUUCUGCCAAUUUGUGUGCAAUUUAAAGUGUCCGA-AGGGGACCCUG
......(((...(((((.((((((..((((((((((((...-.)(((...((((((....(((....)))))))))..)))..))))...)))))))....)))))))-))))....))) ( -34.60)
>DroYak_CAF1 75121 118 + 1
GGAAAACAGCAACUUUGCCGGGCAA-AAAUUGUCAAAGGCA-ACGGCCAAAAAUGGAACUCUGGCAACAGCCAUUUCUGCCAAUUUGUGUGCAAUUUAAAGUGUCCGAAAGGGGACCCUG
((......(((((.(((((.((((.-....))))...))))-).(((...((((((....(((....)))))))))..))).....)).)))........((.(((....))).)))).. ( -36.70)
>DroAna_CAF1 45029 94 + 1
CAAAAAAAUU-------------AGAAACUUGUCAAAGGCAAACGGCCGAAGAGGGAACU---------ACAAUUUCUGCCAAUUUGUGUGCAAUUUAAAGUGUCCGAAGGG-C-UCC--
..........-------------(((((.((((....(((.....)))....((....))---------)))))))))(((..((((..(((........)))..)))).))-)-...-- ( -17.40)
>consensus
GGAAAACAGCAACUUU_CCGGGCAAAAAAUUGUCAAAGGCA_ACGGCCAAAAAUGGAACUCUGGCAACAGCCAUUUCUGCCAAUUUGUGUGCAAUUUAAAGUGUCCGAAAGGGGACCCUG
..................((((((..(((((((...(.(((...(((...((((((....(((....)))))))))..)))....))).))))))))....))))))..(((....))). (-19.66 = -21.85 +   2.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:25 2006