Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,326,314 – 2,326,410 |
Length | 96 |
Max. P | 0.870936 |
Location | 2,326,314 – 2,326,410 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -19.00 |
Consensus MFE | -18.16 |
Energy contribution | -17.95 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.15 |
Mean z-score | -1.69 |
Structure conservation index | 0.96 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870936 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2326314 96 + 22224390 AAGUUGUCUUCUUUCUUCUCUUUUGUUGUAAUGUAAUUGAAUUCUUCUCUUCUCUUACAAUUUUGAAUUUGCUUGAUCGGGAGGAGGCCACUGUAU .(((.(((((((..(................(((((..(((........)))..)))))...(..(......)..)..)..))))))).))).... ( -17.60) >DroSec_CAF1 24527 92 + 1 AAGUUGUCUUCUCUCUUCUCUU----UGAAUCGUAAUUGAAAUCUUCUCUUCUCUUACAGUUUUGAAUUUGAUUGAUCGGGAGAGGGCCACUCUAU .(((.((((((((((...((..----.((((.((((..(((........)))..)))).)))).))....((....)))))))))))).))).... ( -21.00) >DroSim_CAF1 27056 92 + 1 AAGUUGUCUUUUCUCUUCUCUU----UGAAUCGUAAUUGAAAUCUUCUCUUCUCUUACAGUUUUGAAUUUGAUUGAUCGGGAGAGGGCCACUCUAU .(((.((((((((((...((..----.((((.((((..(((........)))..)))).)))).))....((....)))))))))))).))).... ( -18.40) >consensus AAGUUGUCUUCUCUCUUCUCUU____UGAAUCGUAAUUGAAAUCUUCUCUUCUCUUACAGUUUUGAAUUUGAUUGAUCGGGAGAGGGCCACUCUAU .(((.((((((((((.((.........((((.((((..(((........)))..)))).))))...........))..)))))))))).))).... (-18.16 = -17.95 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:53 2006