Locus 8329

Sequence ID X_DroMel_CAF1
Location 20,676,804 – 20,676,906
Length 102
Max. P 0.717352
window13684

overview

Window 4

Location 20,676,804 – 20,676,906
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.83
Mean single sequence MFE -21.14
Consensus MFE -7.46
Energy contribution -8.03
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -3.14
Structure conservation index 0.35
SVM decision value 0.39
SVM RNA-class probability 0.717352
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20676804 102 + 22224390
-----AAAAACAACAAGCCAUGAAAACAAAUAAACAUAAAUUGAAUGCAAUUGUAUGAUUAAUUGUUAAGGGCCAGCAAGACAGCC----GAACA---------AAUUUCAAUUUGUACA
-----...........(((.....(((((.(((.(((((((((....))))).)))).))).)))))...)))..((......)).----(.(((---------(((....)))))).). ( -15.90)
>DroEre_CAF1 73226 102 + 1
-----AAGAACAACAAGGCCUGAUAAUAAAUAUACAUAAAUUGAAUGCAAUUGCAUGAUUAAUUGUUAAGGGCCAGCAAGACAGCC----GAACA---------AAUUUCAAUUUGUACA
-----...........(((((..((((((.((..(((.(((((....)))))..)))..)).)))))).))))).((......)).----(.(((---------(((....)))))).). ( -19.70)
>DroYak_CAF1 74665 111 + 1
-----AAAAACAACAAGCCAUGAAAGCAAAUAAUCAUAAAUUGAAUGCAAUUGUAUGAUUAAUUGUUAAGGGCCAGCAAGACAGCC----GCACAAAUUGUACAAAUUGCAAUUUGUGCA
-----...........(((.....(((((.(((((((((((((....))))).)))))))).)))))...)))..((......)).----((((((((((((.....)))))))))))). ( -33.50)
>DroAna_CAF1 44688 109 + 1
ACAAAAAAAAAGAGAGACAAUGAAUGCAAAUAAACAUAAAUUGAUUGCAAUUUCAUGAUUAAUUGCUGAG--CGAAAAAGACAAAAAAAAAAACA---------AAUUGCAAUUUGUUGG
.................(((..(((((((.(((.(((((((((....)))))).))).))).))))...(--(((....................---------..)))).)))..))). ( -15.45)
>consensus
_____AAAAACAACAAGCCAUGAAAACAAAUAAACAUAAAUUGAAUGCAAUUGCAUGAUUAAUUGUUAAGGGCCAGCAAGACAGCC____GAACA_________AAUUGCAAUUUGUACA
...................................((((((((...(((((((......))))))).........((......))........................))))))))... ( -7.46 =  -8.03 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:22 2006