| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,675,843 – 20,675,963 |
| Length | 120 |
| Max. P | 0.997841 |
| Location | 20,675,843 – 20,675,963 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 57.14 |
| Mean single sequence MFE | -45.30 |
| Consensus MFE | -16.66 |
| Energy contribution | -21.87 |
| Covariance contribution | 5.20 |
| Combinations/Pair | 1.23 |
| Mean z-score | -3.70 |
| Structure conservation index | 0.37 |
| SVM decision value | 2.94 |
| SVM RNA-class probability | 0.997841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20675843 120 - 22224390 AGUGGAGGCUGGAUUCUGGGUUCUGGGUUCUGGAUUCUGAAUCCUGGGUACUGGGCGCUGGAUCCAGGAUCCAGAAUCCUGGUUCCGGGUAACUGGGGCAGGAGCAGCUGUCGUUGCAGU .(..(.(((((..((((((((((((((((((((((((.(..(((........)))..).))))))))))))))))))))..(((((((....))))))))))).)))))....)..)... ( -60.00) >DroEre_CAF1 72222 99 - 1 AGUGGAGGCUGUAGUCCGGAUUCCGGAUUCUGGAU-------CC-------U-------GGGCGCAGGAUCCAGGAUCCUGGUUCCGGGUAACUGGGGCAGGAGCAGCUGUCGUUGCAGU .......(((.(((((((((..(((((((((((((-------((-------(-------(....))))))))))))))).)).)))))...)))).)))....(((((....)))))... ( -53.10) >DroAna_CAF1 43875 93 - 1 GGGGGAGGGUGCAUAGGAGGUCCUGGAAACUGAA-ACUGAAACU---GUAGCAGGAGAAGGAGC-A----------------------GGAGCAGGAGCAGGAGCAGCUGUCGUUGCAUU .((.((.(((((.((((....))))....(((..-.(((...((---((..(.......)..))-)----------------------)...)))...)))..))).)).)).))..... ( -22.80) >consensus AGUGGAGGCUGCAUUCCGGGUUCUGGAUUCUGGAU_CUGAA_CC___GUA_U_GG_G__GGACCCAGGAUCCAG_AUCCUGGUUCCGGGUAACUGGGGCAGGAGCAGCUGUCGUUGCAGU .......((((((..(((((.((.(((((((((((.......((...............)).......))))))))))).)).)))))........(((((......)))))..)))))) (-16.66 = -21.87 + 5.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:21 2006