Locus 8327

Sequence ID X_DroMel_CAF1
Location 20,674,625 – 20,674,733
Length 108
Max. P 0.730778
window13681 window13682

overview

Window 1

Location 20,674,625 – 20,674,733
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 90.43
Mean single sequence MFE -32.23
Consensus MFE -25.10
Energy contribution -25.43
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.78
SVM decision value 0.07
SVM RNA-class probability 0.566484
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20674625 108 + 22224390
AGCAUAAUUGCGCUAUUUUCUUACAGUGCACUUGUGUAUCUGUGUGCAAAUGUAAGGCAUAAGAUAGACAAUUACACUUUUGCCACUGCAAGAGGGAGACGGCGCGAG
.......((((((..(((((((..((((...((((.(((((.(((((.........)))))))))).))))...))))(((((....))))))))))))..)))))). ( -35.60)
>DroEre_CAF1 71077 108 + 1
GACAUGUAUGCACUUACUUCUUCCAGUGCACAUGUGUAUCUGUGUGCAAAUGUAAAGCAUAAGAUAGACAAUUACACUUUUGCCACUGCAAGAGGGAGACGGGGCGAG
........(((.(((...((((((.(((....(((.(((((.(((((.........)))))))))).)))....)))((((((....)))))))))))).)))))).. ( -29.60)
>DroYak_CAF1 72614 108 + 1
CACAUACUUACACUUAUUUCUUGCAGUGCACAUGUGUAUCUGUGUGCAAAUGUAAAGCAUAAGAUAGACAAUUACACUUUUGCCACUGCAAGAGGGAGACGGCGCGAG
......((..(.((...(((((((((((((...(((((..(((.(((..(((.....)))..).)).)))..)))))...)).)))))))))))(....))).)..)) ( -31.50)
>consensus
AACAUAAUUGCACUUAUUUCUUACAGUGCACAUGUGUAUCUGUGUGCAAAUGUAAAGCAUAAGAUAGACAAUUACACUUUUGCCACUGCAAGAGGGAGACGGCGCGAG
.........................((((...(((.(((((.(((((.........)))))))))).)))......(((((((....)))))))(....).))))... (-25.10 = -25.43 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 20,674,625 – 20,674,733
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 90.43
Mean single sequence MFE -27.31
Consensus MFE -25.63
Energy contribution -25.85
Covariance contribution 0.23
Combinations/Pair 1.10
Mean z-score -1.60
Structure conservation index 0.94
SVM decision value 0.42
SVM RNA-class probability 0.730778
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20674625 108 - 22224390
CUCGCGCCGUCUCCCUCUUGCAGUGGCAAAAGUGUAAUUGUCUAUCUUAUGCCUUACAUUUGCACACAGAUACACAAGUGCACUGUAAGAAAAUAGCGCAAUUAUGCU
...((((..(.....((((((((((.((...(((((.((((....(..(((.....)))..)...)))).)))))...))))))))))))..)..))))......... ( -30.10)
>DroEre_CAF1 71077 108 - 1
CUCGCCCCGUCUCCCUCUUGCAGUGGCAAAAGUGUAAUUGUCUAUCUUAUGCUUUACAUUUGCACACAGAUACACAUGUGCACUGGAAGAAGUAAGUGCAUACAUGUC
........((((..(((((.(((((.((...(((((.((((....(..(((.....)))..)...)))).)))))...))))))).))).))..)).))......... ( -23.20)
>DroYak_CAF1 72614 108 - 1
CUCGCGCCGUCUCCCUCUUGCAGUGGCAAAAGUGUAAUUGUCUAUCUUAUGCUUUACAUUUGCACACAGAUACACAUGUGCACUGCAAGAAAUAAGUGUAAGUAUGUG
((..(((........((((((((((.((...(((((.((((....(..(((.....)))..)...)))).)))))...)))))))))))).....)))..))...... ( -28.62)
>consensus
CUCGCGCCGUCUCCCUCUUGCAGUGGCAAAAGUGUAAUUGUCUAUCUUAUGCUUUACAUUUGCACACAGAUACACAUGUGCACUGCAAGAAAUAAGUGCAAAUAUGUC
...((((........((((((((((.((...(((((.((((....(..(((.....)))..)...)))).)))))...)))))))))))).....))))......... (-25.63 = -25.85 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:20 2006