Locus 8325

Sequence ID X_DroMel_CAF1
Location 20,672,375 – 20,672,487
Length 112
Max. P 0.905712
window13676

overview

Window 6

Location 20,672,375 – 20,672,487
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.89
Mean single sequence MFE -29.92
Consensus MFE -24.46
Energy contribution -25.22
Covariance contribution 0.76
Combinations/Pair 1.08
Mean z-score -1.84
Structure conservation index 0.82
SVM decision value 1.04
SVM RNA-class probability 0.905712
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20672375 112 - 22224390
--CGCAGUCGCCGCAGUCGGCUUUUUGCAUUAAAUCAACGCGCGACCACCGCCAACAAUAAUCAACAAAACAUAGCGCACAGAGAAAACUUUGGCCGCAAUAAAAGCCGGCACC------
--.((.......)).(((((((((((((...........(.(((.....)))).....................(.((.(((((....)))))))))))..))))))))))...------ ( -29.00)
>DroSec_CAF1 74210 112 - 1
--CGCAGUCGCCGCAGUCGGCUUUUUGCAUUAAAUCAACGCGCCACCACCGCCAACAAUAAUCAACAAAACAUAGCGCAGAGUGAAAACUUUGGCCGCAAUAAAAGCCGGCACC------
--.((.......)).(((((((((((((...........(((.......)))......................((.((((((....)))))))).)))..))))))))))...------ ( -31.10)
>DroEre_CAF1 68684 112 - 1
--CGCUGCUGCUGCAGUCGGCUUUUUGCAUUAAAUCAACGCGCGACCACUGCCAACAAUAAUCAACAAAACAGAGCGCACAGUGAAAACUUUGGCCGCAAUAAACGCCGGCACC------
--...(((....)))(((((((((((((...........((((.....(((...................))).))))..(((....)))......)))).))).))))))...------ ( -26.21)
>DroYak_CAF1 70299 112 - 1
--CGCAGUCGUUGCAGUCGGCUUUUUGCAUUAAAUCAACGCGCGACCACCGCCAACAAUAAUCAACAAAACAGAGCGCACAGAGAAAACUUUGGCCGCAAUAAACGCCGGCACC------
--.((((...)))).(((((((((((((...........(((((.....))).........((.........))))((.(((((....))))))).)))).))).))))))...------ ( -27.10)
>DroAna_CAF1 38968 120 - 1
AGUGCAUCAAGUGCAGUCGGCUUUUUGCAUUAAAUCAACGCGCGGCCGCUGCCAACAAUAAUCAACAAAACAGAGCGCACAGAGGAAACUUUGGCCGCAAUAAAGGCCGGUACACAGGCU
...((.....((((...(((((((((((...........(((((((....)))........((.........)))))).(((((....)))))...)))..))))))))))))....)). ( -36.20)
>consensus
__CGCAGUCGCUGCAGUCGGCUUUUUGCAUUAAAUCAACGCGCGACCACCGCCAACAAUAAUCAACAAAACAGAGCGCACAGAGAAAACUUUGGCCGCAAUAAAAGCCGGCACC______
...((.......)).(((((((((((((...........((((...............................)))).(((((....)))))...)))..))))))))))......... (-24.46 = -25.22 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:16 2006