Locus 8323

Sequence ID X_DroMel_CAF1
Location 20,669,090 – 20,669,202
Length 112
Max. P 0.708787
window13672

overview

Window 2

Location 20,669,090 – 20,669,202
Length 112
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 82.23
Mean single sequence MFE -16.79
Consensus MFE -15.30
Energy contribution -15.55
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.91
SVM decision value 0.37
SVM RNA-class probability 0.708787
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20669090 112 + 22224390
GUGUUCCACUUACAGGGCUUAACAAGCCCCCACUUUUCCACUUUUCCACUUUUC--C--ACUUUCCCACAUUUUCCUCCCCCGCAACAGAUUCCUGCUUGCGCCCAUUGUUGUUGC
(((...........(((((.....))))).........))).............--.--.......................(((((((......((....))......))))))) ( -16.55)
>DroSec_CAF1 70962 96 + 1
GUGUUCCACUUACAGGGCUUAACAAGCCCCCACUUUU----------------C--C--ACUUUCCCACAUUUUCCUACCCCGCAACAGAUUCCUGCUUGCGCCCAUUGUUGUUGC
(((...........(((((.....)))))........----------------.--)--)).....................(((((((......((....))......))))))) ( -16.55)
>DroEre_CAF1 66224 116 + 1
GUGUUCCACUUACAGGGCUUAACAAGCCCCCACUUUUCCACUUUCCCACUGUUUCCCACAGUUUCCCACAGUUUCCUACCCCGCCACAGAUUCCUGCUUGCGCCCAUUGUUGUUGC
(((...........(((((.....)))))..................(((((.....)))))....))).............((.((((......((....))......)))).)) ( -17.50)
>DroYak_CAF1 67644 100 + 1
GUGCUCCACUUACAGGGCUUAACAAGCCCCCACUUUUCCACUUUCACCC-A----------UUUCCCAC-----CCUCCCCCGCAACAGAUUCUUGCUGGCGCCCAUUGUUGUUGC
(((...........(((((.....))))).........)))........-.----------........-----........(((((((......((....))......))))))) ( -16.55)
>consensus
GUGUUCCACUUACAGGGCUUAACAAGCCCCCACUUUUCCACUUUCCCAC____C__C__ACUUUCCCACAUUUUCCUACCCCGCAACAGAUUCCUGCUUGCGCCCAUUGUUGUUGC
..............(((((.....))))).....................................................(((((((......((....))......))))))) (-15.30 = -15.55 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:12 2006