| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,668,431 – 20,668,527 |
| Length | 96 |
| Max. P | 0.500000 |
| Location | 20,668,431 – 20,668,527 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 93.78 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -22.44 |
| Energy contribution | -22.57 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.87 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20668431 96 - 22224390 UAAAUUAUUGCAGAUUUAUUUUUCGGUCU-UUGCGGUAAUUUAAUGGCUUCGACAGCUGCUCUGGGACCGAAUACCGAAUUCGUUUGGGCGAGUUUA ((((((......))))))...((((((((-(.(((((..................)))))...)))))))))....((((((((....)))))))). ( -24.97) >DroSec_CAF1 70315 96 - 1 UAAAUUAUUGCAGAUUUAUUUUUCGGUCC-UUGCGGUAAUUUAAUGGCUUCGACAGCUGCUCUGGGACCGAAUUCAGAAUUCGUUUGGGCGAGUUUG ((((((......))))))...((((((((-(.(((((..................)))))...)))))))))....((((((((....)))))))). ( -27.77) >DroEre_CAF1 65592 97 - 1 UAAAUUAUUGCAGAUAUAUUUUUCGGUCUUUUGCGGUAAUUUAAUGGCUUCGACAGCUGCUCGGGGACCGAGUUCCGAAUUCGUUUGGGGGAGUUUA ((((((((((((((...............))))))))))))))..((((((.......((((((...))))))((((((....)))))))))))).. ( -27.06) >DroYak_CAF1 66993 96 - 1 UAAAUAAUUGCAGAUUUAUUUUUCGGUCU-UUGCGGUAAUUUAAUGGCUUCGACAGCUGCUUUGGGACCGAGUUCAGAAUUCGUUUGGGGGAGUUUA (((((..((.(((((..((((((((((((-(.(((((..................)))))...))))))))....)))))..))))).))..))))) ( -22.87) >consensus UAAAUUAUUGCAGAUUUAUUUUUCGGUCU_UUGCGGUAAUUUAAUGGCUUCGACAGCUGCUCUGGGACCGAAUUCAGAAUUCGUUUGGGCGAGUUUA ((((((.((.(((((..((((((((((((...(((((..................)))))....))))))))....))))..))))).)).)))))) (-22.44 = -22.57 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:11 2006