Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,325,076 – 2,325,232 |
Length | 156 |
Max. P | 0.781759 |
Location | 2,325,076 – 2,325,177 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 95.73 |
Mean single sequence MFE | -26.72 |
Consensus MFE | -22.52 |
Energy contribution | -22.68 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.55 |
Structure conservation index | 0.84 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2325076 101 - 22224390 AGUGCACAACCAAACCUGUCAUCCGAGGUG-GCAGGGGUCCCAAGACCAUCCUUC----AUUCCCCUUUUUGCUCGUUGAUAACAUUAAUGAACUGUCUAUGUGCC ...(((((..((((((((((((.....)))-)))))((((....)))).......----.........)))).((((((((...))))))))........))))). ( -28.40) >DroSec_CAF1 23263 101 - 1 AGUGCCUAACCAAACCUGUCAUCCGAGGUG-GCAGGGGUCCCAAGACCAUCCUUC----AUUCCCCUUUUUGCUCGUUGAUAACAUUAAUGAACUGUCUAUGUGCC .(..(.((..((..((((((((.....)))-)))))((((....)))).......----..............((((((((...))))))))..))..)).)..). ( -24.50) >DroSim_CAF1 25813 101 - 1 AGUGCACAACCAAACCUGUCAUCCGAGGUG-GCAGGGGUCCCAAGACCAUCCUUC----AUUCCCCUUUUUGCUCGUUGAUAACAUUAAUGAACUGUCUAUGUGCC ...(((((..((((((((((((.....)))-)))))((((....)))).......----.........)))).((((((((...))))))))........))))). ( -28.40) >DroEre_CAF1 25295 102 - 1 AGUGCACAACCAAACCUGUCAUCUGAGGUGGGCAGGGGUCCCAAGACCAUCCUUC----AUUCCCCUUUUUGCUCGUUGAUAACAUUAAUGAACUGUCUAUGUGCC ...(((((.....((((........))))((((((.((((....)))).......----..............((((((((...)))))))).)))))).))))). ( -26.40) >DroYak_CAF1 25352 105 - 1 AGUGCAUAACCAAACCUGUCAUCUGAGGUG-GCAGGGGUCCGAAGACCAUCCUUCAUUCAUUCCCCUUUUUGCUCGCUGAUAACAUUAAUGAACUGUCUAUGUGCC .(..((((..((..((((((((.....)))-)))))((((....))))........((((((.........(....)..........)))))).))..))))..). ( -25.91) >consensus AGUGCACAACCAAACCUGUCAUCCGAGGUG_GCAGGGGUCCCAAGACCAUCCUUC____AUUCCCCUUUUUGCUCGUUGAUAACAUUAAUGAACUGUCUAUGUGCC ...(((((..((((((((((((.....))).)))))((((....))))....................)))).((((((((...))))))))........))))). (-22.52 = -22.68 + 0.16)
Location | 2,325,141 – 2,325,232 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -19.29 |
Consensus MFE | -15.43 |
Energy contribution | -15.43 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.80 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725926 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2325141 91 - 22224390 ----CACAAAAUAACAACAAGUGUUGCACAUCAAAUCCAGCGCG--UACAUAAACCAGAAAAGUGCACAACCAAACCUGUCAUCCGAGGUG-GCAGGG ----................((((((...........))))))(--(((.............)))).........((((((((.....)))-))))). ( -20.42) >DroSec_CAF1 23328 91 - 1 ----CACAAAAUUACAACAAGUGUUGCACAUCAAAUCCAGCGCG--UACAUAAACCAGAAAAGUGCCUAACCAAACCUGUCAUCCGAGGUG-GCAGGG ----................((((((...........))))))(--(((.............)))).........((((((((.....)))-))))). ( -19.52) >DroSim_CAF1 25878 91 - 1 ----CACAAAAUAACAACAAGUGUUGCACAUCAAAUCCAGCGCG--UACAUAAACCAGAAAAGUGCACAACCAAACCUGUCAUCCGAGGUG-GCAGGG ----................((((((...........))))))(--(((.............)))).........((((((((.....)))-))))). ( -20.42) >DroEre_CAF1 25360 92 - 1 ------CAAAAUAACAACAAGUGUUGCACAUCAAAUCCAGCGCGUACACAUAAACCAGAAAAGUGCACAACCAAACCUGUCAUCUGAGGUGGGCAGGG ------..............((((((...........))))))((((...............)))).........((((((((.....)).)))))). ( -16.46) >DroYak_CAF1 25421 97 - 1 AAAUCACAAAAUAACAACAAGUGUUGCACAUCAAAUCAAGCGCGCGUACAUAAACCAGAAAAGUGCAUAACCAAACCUGUCAUCUGAGGUG-GCAGGG ..............((((....))))...............((((.................)))).........((((((((.....)))-))))). ( -19.63) >consensus ____CACAAAAUAACAACAAGUGUUGCACAUCAAAUCCAGCGCG__UACAUAAACCAGAAAAGUGCACAACCAAACCUGUCAUCCGAGGUG_GCAGGG ..............((((....)))).............((((...................)))).........((((((((.....))).))))). (-15.43 = -15.43 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:52 2006