Locus 832

Sequence ID X_DroMel_CAF1
Location 2,325,076 – 2,325,232
Length 156
Max. P 0.781759
window1345 window1346

overview

Window 5

Location 2,325,076 – 2,325,177
Length 101
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 95.73
Mean single sequence MFE -26.72
Consensus MFE -22.52
Energy contribution -22.68
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.55
Structure conservation index 0.84
SVM decision value 0.56
SVM RNA-class probability 0.781759
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2325076 101 - 22224390
AGUGCACAACCAAACCUGUCAUCCGAGGUG-GCAGGGGUCCCAAGACCAUCCUUC----AUUCCCCUUUUUGCUCGUUGAUAACAUUAAUGAACUGUCUAUGUGCC
...(((((..((((((((((((.....)))-)))))((((....)))).......----.........)))).((((((((...))))))))........))))). ( -28.40)
>DroSec_CAF1 23263 101 - 1
AGUGCCUAACCAAACCUGUCAUCCGAGGUG-GCAGGGGUCCCAAGACCAUCCUUC----AUUCCCCUUUUUGCUCGUUGAUAACAUUAAUGAACUGUCUAUGUGCC
.(..(.((..((..((((((((.....)))-)))))((((....)))).......----..............((((((((...))))))))..))..)).)..). ( -24.50)
>DroSim_CAF1 25813 101 - 1
AGUGCACAACCAAACCUGUCAUCCGAGGUG-GCAGGGGUCCCAAGACCAUCCUUC----AUUCCCCUUUUUGCUCGUUGAUAACAUUAAUGAACUGUCUAUGUGCC
...(((((..((((((((((((.....)))-)))))((((....)))).......----.........)))).((((((((...))))))))........))))). ( -28.40)
>DroEre_CAF1 25295 102 - 1
AGUGCACAACCAAACCUGUCAUCUGAGGUGGGCAGGGGUCCCAAGACCAUCCUUC----AUUCCCCUUUUUGCUCGUUGAUAACAUUAAUGAACUGUCUAUGUGCC
...(((((.....((((........))))((((((.((((....)))).......----..............((((((((...)))))))).)))))).))))). ( -26.40)
>DroYak_CAF1 25352 105 - 1
AGUGCAUAACCAAACCUGUCAUCUGAGGUG-GCAGGGGUCCGAAGACCAUCCUUCAUUCAUUCCCCUUUUUGCUCGCUGAUAACAUUAAUGAACUGUCUAUGUGCC
.(..((((..((..((((((((.....)))-)))))((((....))))........((((((.........(....)..........)))))).))..))))..). ( -25.91)
>consensus
AGUGCACAACCAAACCUGUCAUCCGAGGUG_GCAGGGGUCCCAAGACCAUCCUUC____AUUCCCCUUUUUGCUCGUUGAUAACAUUAAUGAACUGUCUAUGUGCC
...(((((..((((((((((((.....))).)))))((((....))))....................)))).((((((((...))))))))........))))). (-22.52 = -22.68 +   0.16) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 2,325,141 – 2,325,232
Length 91
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 92.58
Mean single sequence MFE -19.29
Consensus MFE -15.43
Energy contribution -15.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.80
SVM decision value 0.41
SVM RNA-class probability 0.725926
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2325141 91 - 22224390
----CACAAAAUAACAACAAGUGUUGCACAUCAAAUCCAGCGCG--UACAUAAACCAGAAAAGUGCACAACCAAACCUGUCAUCCGAGGUG-GCAGGG
----................((((((...........))))))(--(((.............)))).........((((((((.....)))-))))). ( -20.42)
>DroSec_CAF1 23328 91 - 1
----CACAAAAUUACAACAAGUGUUGCACAUCAAAUCCAGCGCG--UACAUAAACCAGAAAAGUGCCUAACCAAACCUGUCAUCCGAGGUG-GCAGGG
----................((((((...........))))))(--(((.............)))).........((((((((.....)))-))))). ( -19.52)
>DroSim_CAF1 25878 91 - 1
----CACAAAAUAACAACAAGUGUUGCACAUCAAAUCCAGCGCG--UACAUAAACCAGAAAAGUGCACAACCAAACCUGUCAUCCGAGGUG-GCAGGG
----................((((((...........))))))(--(((.............)))).........((((((((.....)))-))))). ( -20.42)
>DroEre_CAF1 25360 92 - 1
------CAAAAUAACAACAAGUGUUGCACAUCAAAUCCAGCGCGUACACAUAAACCAGAAAAGUGCACAACCAAACCUGUCAUCUGAGGUGGGCAGGG
------..............((((((...........))))))((((...............)))).........((((((((.....)).)))))). ( -16.46)
>DroYak_CAF1 25421 97 - 1
AAAUCACAAAAUAACAACAAGUGUUGCACAUCAAAUCAAGCGCGCGUACAUAAACCAGAAAAGUGCAUAACCAAACCUGUCAUCUGAGGUG-GCAGGG
..............((((....))))...............((((.................)))).........((((((((.....)))-))))). ( -19.63)
>consensus
____CACAAAAUAACAACAAGUGUUGCACAUCAAAUCCAGCGCG__UACAUAAACCAGAAAAGUGCACAACCAAACCUGUCAUCCGAGGUG_GCAGGG
..............((((....)))).............((((...................)))).........((((((((.....))).))))). (-15.43 = -15.43 +  -0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:52 2006