Locus 8319

Sequence ID X_DroMel_CAF1
Location 20,666,445 – 20,666,551
Length 106
Max. P 0.998126
window13665

overview

Window 5

Location 20,666,445 – 20,666,551
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.40
Mean single sequence MFE -28.18
Consensus MFE -27.44
Energy contribution -27.68
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.97
SVM decision value 3.01
SVM RNA-class probability 0.998126
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20666445 106 - 22224390
CAGUUUUCCACAGCGAACAGCAAAAACUUCGCCGUUAGCAGUAAUCAGUUAACGGAGGGGGGAUCCGCA--------------AAAAUGGAAAACGGAAAAUGGCAACUGACGACCAAGA
..((((((((..((.....)).....((((.((((((((........)))))))).)))).........--------------....))))))))((.....(....)......)).... ( -29.50)
>DroSec_CAF1 68096 106 - 1
CAGUUUUCCACAGCGAACAGCAAAAACUUCGCCGUUAGCAGUAAUCAGUUAACGGAGGAGGGUUCCGCA--------------AAAAUGGAAAACGGAAAAUGGCAACUGACGACCAAGA
..((((((((..((((((........((((.((((((((........)))))))).)))).))).))).--------------....))))))))((.....(....)......)).... ( -30.80)
>DroSim_CAF1 45575 106 - 1
CAGUUUUCCACAGCGAACAGCAAAAACUUCGCCGUUAGCAGUAAUCAGUUAACGGAGGGGGGUUCCGCA--------------AAAAUGGAAAACGGAAAAUGGCAACUGACGACCAAGA
..((((((((..((((((........((((.((((((((........)))))))).)))).))).))).--------------....))))))))((.....(....)......)).... ( -30.00)
>DroEre_CAF1 63754 106 - 1
CAGUUUUCCACAGCGAACAGCAAAAACUUCGCCUUUAGCAGUAAUCAGUUAACGGAGGGGGCUGCCGGA--------------AAAAUGGAAAACGGAAAAUGGCAACCGACGACCAAGA
..((((((((..(((((..........))))).((..(((((..((.(....).))....)))))..))--------------....))))))))((.....(....)......)).... ( -24.40)
>DroYak_CAF1 65151 120 - 1
CAGUUUUCCACAGCGAACAGCAAAAACUUCGCCUUUAGCAGUAAUCAGUUAACGGAGGGGGGUUUUGGAUAAAUGGAAAAUGGAAAAUGGAAAACGGAAAAUGGCAACUGACGACCAAGA
..((((((((..((.....)).((((((((.((((((((........))))...)))))))))))).....................))))))))((.....(....)......)).... ( -26.20)
>consensus
CAGUUUUCCACAGCGAACAGCAAAAACUUCGCCGUUAGCAGUAAUCAGUUAACGGAGGGGGGUUCCGCA______________AAAAUGGAAAACGGAAAAUGGCAACUGACGACCAAGA
..((((((((..((.....)).....((((.((((((((........)))))))).))))...........................))))))))((.....(....)......)).... (-27.44 = -27.68 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:05 2006