Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,665,464 – 20,665,574 |
Length | 110 |
Max. P | 0.628504 |
Location | 20,665,464 – 20,665,574 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 90.06 |
Mean single sequence MFE | -18.98 |
Consensus MFE | -16.31 |
Energy contribution | -16.12 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -1.46 |
Structure conservation index | 0.86 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.628504 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20665464 110 + 22224390 ACAUGCAAAUAUCUCAGCGCUCCUGUCAGUUUUUCACAGUGGGGACACUCGCUCAUCAGAAAG---------AAACAGCAACAAAAAAAUAAGAAAAAAUGAGAAAAACCCAGGAAAAA ....((..........))..(((((...(((((((..((((....)))).(((..((.....)---------)...))).......................))))))).))))).... ( -21.40) >DroSec_CAF1 67100 107 + 1 ACAUGCAAAUAUCUCAGCUCUCCUGUCACUUUUUCACAGUGGGGACACUCGCUCAUCAGAAAG---------AAACAGCAACGAAA-UAUAA--AAAAAGGAGGAAAACCCAGGAAAAA ....................(((((....((((((..((((....)))).(((..((.....)---------)...))).......-.....--......))))))....))))).... ( -18.30) >DroSim_CAF1 44569 109 + 1 ACAUGCAAAUAUCUCAGCUCUCCUGUCACUUUUUCACAGUGGGGACACUCGCUCAUCAGAAAG---------AAACAGCAACGAAA-UAUAAGAAAAAAGGAGGAAAACCCAGGAAAAA ....................(((((((..((((((..((((....)))).(((..((.....)---------)...))).......-.....))))))..))((....))))))).... ( -19.90) >DroEre_CAF1 62759 118 + 1 ACAUGCAAAUAUCUCAGCUCUCCUGUCACUUUUUCACUGUGGGGACACUCGCUCAUCAGAAAAAAAAGAAAAAAACAGCAUCAAAA-AAUAAGAAAAUAGGAGGAAAACCCAGGAAAAA ....................(((((((...(((((...(((....)))..(((.......................))).......-.....)))))...))((....))))))).... ( -16.30) >consensus ACAUGCAAAUAUCUCAGCUCUCCUGUCACUUUUUCACAGUGGGGACACUCGCUCAUCAGAAAG_________AAACAGCAACAAAA_AAUAAGAAAAAAGGAGGAAAACCCAGGAAAAA ....................(((((....((((((...(((....)))..(((.......................))).....................))))))....))))).... (-16.31 = -16.12 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:04 2006