Locus 8314

Sequence ID X_DroMel_CAF1
Location 20,664,092 – 20,664,182
Length 90
Max. P 0.998739
window13655

overview

Window 5

Location 20,664,092 – 20,664,182
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 97.11
Mean single sequence MFE -22.24
Consensus MFE -21.38
Energy contribution -21.22
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -2.05
Structure conservation index 0.96
SVM decision value 3.21
SVM RNA-class probability 0.998739
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20664092 90 - 22224390
CGCAUAAUUCAGGCCCUUGAAACCGCGAGUGAGAACAUUAAGUUAAUUUAAGUGGCUCACUUGCUUCCAUCCAAACAAUUGUCAGUGCAU
.((((..(((((....)))))...(((((((((.((.(((((....)))))))..)))))))))....................)))).. ( -23.10)
>DroSec_CAF1 65769 90 - 1
CGCAUAAUUCCGGCCCUUGAAACCGCGAGUGAGAACAUUAAAUUAAUUUAAGUGGCUCACUUGCUUCCAUCCAAACAAUUGUCAGUGCAU
.((((......((.........))(((((((((.((.(((((....)))))))..)))))))))....................)))).. ( -21.30)
>DroSim_CAF1 43227 90 - 1
CGCAUAAUUCCGGCCCUUGAAACCGCGAGUGAGAACAUUAAAUUAAUUUAAGUGGCUCACUUGCUUCCAUCCAAACAAUUGUCAGUGCAU
.((((......((.........))(((((((((.((.(((((....)))))))..)))))))))....................)))).. ( -21.30)
>DroEre_CAF1 61369 90 - 1
CGCAUAAUUCCGGCCCUCGAAACCGCGAGUGAGAACAUUAAAUUAAUUUAAGUGGCUCACUUGCUCCCAUCGAAACAAUUGUCAGUGCAU
.((((...........((((....(((((((((.((.(((((....)))))))..))))))))).....))))...........)))).. ( -22.75)
>DroYak_CAF1 62697 90 - 1
CGCAUAAUUCCGGCCCUCGAAACCGCGAGUGAGAACAUUAAAUUAAUUUAAGUGGCUCACUUGCUCCCAUCGAAACAAUUGUCAGUGCAU
.((((...........((((....(((((((((.((.(((((....)))))))..))))))))).....))))...........)))).. ( -22.75)
>consensus
CGCAUAAUUCCGGCCCUUGAAACCGCGAGUGAGAACAUUAAAUUAAUUUAAGUGGCUCACUUGCUUCCAUCCAAACAAUUGUCAGUGCAU
.((((......((.........))(((((((((.((.(((((....)))))))..)))))))))....................)))).. (-21.38 = -21.22 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:56 2006