Locus 8311

Sequence ID X_DroMel_CAF1
Location 20,660,617 – 20,660,730
Length 113
Max. P 0.999417
window13649

overview

Window 9

Location 20,660,617 – 20,660,730
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.32
Mean single sequence MFE -25.80
Consensus MFE -23.10
Energy contribution -23.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.59
Structure conservation index 0.90
SVM decision value 3.58
SVM RNA-class probability 0.999417
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20660617 113 - 22224390
AAAGC------AAAAAGAAAUAAAGUAAUCUGGCAGCC-CCCAGAGAAAGCUGACAAAUCUAAAGGCAUUGCCUCCGAAAACUUUUGGAUUUGUGUCAGCAAAACUCCAUCUCUAUCUCU
.....------....(((.((..(((..(((((.....-.)))))....(((((((((((((((((..(((....)))...))))))))))..)))))))...)))..)).)))...... ( -27.30)
>DroSec_CAF1 62386 111 - 1
AAAGCCCAAA-AAAAAGGAAUAAAGUAAGCUGGCAGUC-CCCAGAGAAAGCUGACAAAUCUAAAGGCAUUGCCUCCGAAAACUUUUGGAUUUGUGUCAGCAAAACUCCAUCUC-------
..........-.....(((..........((((.....-.)))).....(((((((((((((((((..(((....)))...))))))))))..))))))).....))).....------- ( -26.70)
>DroSim_CAF1 39790 112 - 1
AAAGCCAAAAAAAAAAGGAAUAAAGUAAGCUGGCAGCC-CCCAGAGAAAGCUGACAAAUCUAAAGGCAUUGCCUCCGAAAACUUUUGGAUUUGUGUCAGCAAAGCUCCAUCUC-------
................(((..........((((.....-.)))).....(((((((((((((((((..(((....)))...))))))))))..))))))).....))).....------- ( -26.70)
>DroEre_CAF1 57907 111 - 1
AAAGC--AAAAAAAUAGAAAUAAAGUAAGCUGGAAACCCCCCAGAGAAAGCUGACAAAUCUAAAGGAAUUGCCUCCGAAAACUUUUGGAUUUGUGUCAGCAAAUCUCCAUCUC-------
.....--........(((...........((((.......)))).....(((((((((((((((((..(((....)))...))))))))))..)))))))...))).......------- ( -23.90)
>DroYak_CAF1 59219 113 - 1
AAAGUCGAAAAAAAACGAAAUAAAGUAAGCUGGAAACCCCCCAGAGAAAGCUGACAAAUCUAAAGGAAUUGCCUCCGAAAACUUUUGGAUUUGUGUCAGCAAAUCUCCAUCCC-------
....(((........)))...........((((.......)))).....(((((((((((((((((..(((....)))...))))))))))..))))))).............------- ( -24.40)
>consensus
AAAGCC_AAAAAAAAAGAAAUAAAGUAAGCUGGCAGCC_CCCAGAGAAAGCUGACAAAUCUAAAGGCAUUGCCUCCGAAAACUUUUGGAUUUGUGUCAGCAAAACUCCAUCUC_______
.............................((((.......)))).....(((((((((((((((((..(((....)))...))))))))))..))))))).................... (-23.10 = -23.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:51 2006