Locus 831

Sequence ID X_DroMel_CAF1
Location 2,324,756 – 2,324,865
Length 109
Max. P 0.514466
window1344

overview

Window 4

Location 2,324,756 – 2,324,865
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.49
Mean single sequence MFE -36.57
Consensus MFE -22.77
Energy contribution -24.55
Covariance contribution 1.78
Combinations/Pair 1.19
Mean z-score -1.40
Structure conservation index 0.62
SVM decision value -0.04
SVM RNA-class probability 0.514466
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2324756 109 - 22224390
-----CUCCACAGUCCGUCGUUUGCCAAGUCCACCUGUAGCUUAAGCACGCACAUUUCUGUUGCCA-UUGGC-AAGAGGUGA----GCGAGCGGAAUGCAACAGGCAGCUGGUCGCAGAA
-----...............(((((..(((...(((((.((((..((.(((.(((((((..((((.-..)))-)))))))).----))).))..)).)).)))))..)))....))))). ( -34.90)
>DroSec_CAF1 22940 109 - 1
-----CUCCACAGUCCGUCUGUUGCCAAGUCCACCUGUAGCUUAAGCACGCACAUUUCUGUUGCCA-UUGGC-AAGAGGUGA----GCGAGCGGAAUGCAACAGGCAGCUGGUCGCAGAA
-----............(((((.((((.((...(((((.((((..((.(((.(((((((..((((.-..)))-)))))))).----))).))..)).)).)))))..)))))).))))). ( -41.60)
>DroSim_CAF1 25498 103 - 1
-----------AGUCCGUCUGUUGCCAAGUCCACCUGUAGCUUAAGCACGCACAUUUCUGUUGCCA-UUGGC-AAGAGGUGA----GCGAGCGGAAUGCAACAGGCAGCUGGUCGCAGAA
-----------......(((((.((((.((...(((((.((((..((.(((.(((((((..((((.-..)))-)))))))).----))).))..)).)).)))))..)))))).))))). ( -41.60)
>DroEre_CAF1 24935 113 - 1
ACCUCCUUCACAGUGCGUCU-UAGCCAAGCCCACCUGUAGCUUGAGCACGCACAUUUCUGUUGCCA-UUGGC-AAGAGGUGA----GCGAGCGGAAUGCAACAGGCAGCUGGUCGCAGAA
.......((((.((((((..-..(((((((.........))))).))))))))....((.(((((.-..)))-)).))))))----((((.(((..(((.....))).))).)))).... ( -41.70)
>DroYak_CAF1 25027 102 - 1
-----------AGUGCGUCU-UAGCCAAGUCCACCUGUAGCUUGAGCACGCACAUUUCGGUUGCCA-UUGGC-AAGAGGCGA----GCGAGCGGAAUGCAACAGGCAGCUGGUCGCAGAA
-----------.((((((((-((((..((.....))...)).)))).))))))..(((..(((((.-((...-.)).)))))----((((.(((..(((.....))).))).)))).))) ( -33.40)
>DroAna_CAF1 29275 97 - 1
----UCU----UGUCACUCC-CAGCGAGGCUCACCUGU---------ACGCACAUUCUUGUAGACUUUUGGCGAAAAGGUGAAAGAGAGAGAGAACUGCAG----CAGCUG-CAGCAGAA
----(((----(.((.((((-(.....)).((((((..---------.(((.((.((.....))....)))))...))))))..))).)))))).((((.(----(....)-).)))).. ( -26.20)
>consensus
_____CU____AGUCCGUCU_UAGCCAAGUCCACCUGUAGCUUAAGCACGCACAUUUCUGUUGCCA_UUGGC_AAGAGGUGA____GCGAGCGGAAUGCAACAGGCAGCUGGUCGCAGAA
.................(((.(.(((.(((...(((((.((....((.(((.(((((((...(((....)))..))))))).....))).)).....)).)))))..)))))).).))). (-22.77 = -24.55 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:51 2006