Locus 8309

Sequence ID X_DroMel_CAF1
Location 20,660,211 – 20,660,331
Length 120
Max. P 0.752089
window13645

overview

Window 5

Location 20,660,211 – 20,660,331
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.04
Mean single sequence MFE -22.94
Consensus MFE -22.20
Energy contribution -22.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.14
Structure conservation index 0.97
SVM decision value 0.48
SVM RNA-class probability 0.752089
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20660211 120 - 22224390
CCUUGGCCAAAAGAGCAGAAUCAUUCUCGAUUUCCAGGCAAUUCUAUUACCAAUAAUUGAAACUUAAGCAUGCCAUUAGCUUUUGCUUUAGUUGGCUCCCAGGACAUAUAAAACCCCCCC
(((.((((((.(((((((((((......)))))...((((.(((.((((....)))).))).(....)..)))).........))))))..))))))...)))................. ( -22.50)
>DroSec_CAF1 61979 114 - 1
CCUUGGCCAAAAGAGCAGAAUCAUUCCCGAUUGCCAGGCAAUUCUAUUACCAAUAAUUGAAACUUAAGCAUGCCAUUAGCUUUUGCUUUAGUUGGCUCCCAGGACAUAUAAU------CC
(((.((((((.(((((((((((......))))....((((.(((.((((....)))).))).(....)..))))........)))))))..))))))...))).........------.. ( -22.50)
>DroSim_CAF1 39386 114 - 1
CCUUGGCCAAAAGAGCAGAAUCAUUCCCGAUUGCCAGGCAAUUCUAUUACCAAUAAUUGAAACUUAAGCAUGCCAUUAGCUUUUGCUUUAGUUGGCUCCCAGGACAUAUAAU------CC
(((.((((((.(((((((((((......))))....((((.(((.((((....)))).))).(....)..))))........)))))))..))))))...))).........------.. ( -22.50)
>DroEre_CAF1 57505 113 - 1
CCUUGGCCAAAAGAGCAGAAUCAUUCUCGAUUCCCAGGCAAUUCUAUUACCAAUAAUUGAAACUUAAGCAUGCCAUUAGCUUUUGCUUUAGUUGGCUCCCAGGACAU--AAUU-----CC
(((.((((((.(((((((((((......)))))...((((.(((.((((....)))).))).(....)..)))).........))))))..))))))...)))....--....-----.. ( -24.70)
>DroYak_CAF1 58813 115 - 1
CCUUGGCCAAAAGAGCAGAAUCAUUCUCGAUUUCCAGGCAAUUCUAUUACCAAUAAUUGAAACUUAAGCAUGCCAUUAGCUUUUGCUUUAGUUGGCUCCCAGGACAUAUAAUU-----UC
(((.((((((.(((((((((((......)))))...((((.(((.((((....)))).))).(....)..)))).........))))))..))))))...)))..........-----.. ( -22.50)
>consensus
CCUUGGCCAAAAGAGCAGAAUCAUUCUCGAUUGCCAGGCAAUUCUAUUACCAAUAAUUGAAACUUAAGCAUGCCAUUAGCUUUUGCUUUAGUUGGCUCCCAGGACAUAUAAU______CC
(((.((((((.(((((((((((......))......((((.(((.((((....)))).))).(....)..))))......)))))))))..))))))...)))................. (-22.20 = -22.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:44 2006