Locus 8308

Sequence ID X_DroMel_CAF1
Location 20,658,833 – 20,658,950
Length 117
Max. P 0.517588
window13644

overview

Window 4

Location 20,658,833 – 20,658,950
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 91.92
Mean single sequence MFE -24.60
Consensus MFE -18.36
Energy contribution -20.12
Covariance contribution 1.76
Combinations/Pair 1.03
Mean z-score -1.66
Structure conservation index 0.75
SVM decision value -0.03
SVM RNA-class probability 0.517588
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20658833 117 - 22224390
AUAUUCUGCCAGUGAACUGCACCUAUACCACGAAUAUAUAUGUGGAUAUUUCCCCCCCAUAUCUGUUUGUUUUGCCUCUAAAUGGCUAUUUGGUUCUCGUUUGCUUUUCGCUUGCCU
.......((.((((((..(((.....((((((((((.(((((.((.........)).))))).)))))))...(((.......))).....))).......)))..)))))).)).. ( -29.10)
>DroSec_CAF1 60665 116 - 1
AUAUUCUGCCAGUGAACUGCACCUAUACCACGAAUAUAUCUGUGGAUAUUUCCC-CCCAUAUCUGUUUGUUUUGCCUCUAAAUGGCUAUUUGGUUCUCGUUUGCUUUUCGCUUGCCU
.......((.((((((..(((.....((((((((((.((.((.((........)-).)).)).)))))))...(((.......))).....))).......)))..)))))).)).. ( -25.80)
>DroSim_CAF1 38034 116 - 1
AUAUUCUGCCAGUGAACUGCACCUAUACCACGAAUAUAUCUGUGGAUAUUUCCC-CCCAUAUCUGUUUGUUUUGCCUCUAAAUGGCUAUUUGGUUCUCGUUUGCUUUUCGCUUGCCU
.......((.((((((..(((.....((((((((((.((.((.((........)-).)).)).)))))))...(((.......))).....))).......)))..)))))).)).. ( -25.80)
>DroEre_CAF1 56308 115 - 1
AUGCACUGGCAGUGUACUGCACCUAUAACACCAAUAUAUCUGUGGAUAUUUCGC--CCAUAUCUGUUUGUUUUGCCUUUAAAUGGCUAUUCGGAUCUCGUUUGCUUUUCGCCUGGUU
..(((..((((((((.(..((..((((.......))))..))..))))))..))--)...(((((...((...(((.......))).)).)))))......)))............. ( -18.90)
>DroYak_CAF1 57563 116 - 1
AUAUUUUUCCAGUGAACUGCACCUAUACCACGAAUAUAUCAGUGGAUAUUUCGC-CCCAUAUCUGUUUGUUUCGCCUCUAAAUGGCUAUUUGGUUCUCGUUCGCUUUUCGCCUGGCU
........((((((((..((((....((((((((.(((((....))))))))).-..................(((.......)))....))))....))..))..)))).)))).. ( -23.40)
>consensus
AUAUUCUGCCAGUGAACUGCACCUAUACCACGAAUAUAUCUGUGGAUAUUUCCC_CCCAUAUCUGUUUGUUUUGCCUCUAAAUGGCUAUUUGGUUCUCGUUUGCUUUUCGCUUGCCU
.......((.((((((..(((.....((((((((((....(((((...........)))))..)))))))...(((.......))).....))).......)))..)))))).)).. (-18.36 = -20.12 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:43 2006