Locus 8306

Sequence ID X_DroMel_CAF1
Location 20,658,373 – 20,658,474
Length 101
Max. P 0.637307
window13642

overview

Window 2

Location 20,658,373 – 20,658,474
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 93.49
Mean single sequence MFE -30.00
Consensus MFE -28.34
Energy contribution -29.18
Covariance contribution 0.84
Combinations/Pair 1.11
Mean z-score -1.10
Structure conservation index 0.94
SVM decision value 0.21
SVM RNA-class probability 0.637307
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20658373 101 - 22224390
A-AAGCCUCUUGAGUUCUAGAUGGCUCUUUGUUGGCUUUUGAAGGUCGUUGCUGGCUUAAUUAGAAAAAAAGGCAGUCGGGCUUUUUCGAGAGGCGCACACU
.-..(((((((((.((((((..((((......((((((....)))))).....))))...))))))..((((((......)))))))))))))))....... ( -31.40)
>DroSec_CAF1 60213 98 - 1
G-AAGCCUCUUCAGUUCUCGAUGGCUCUUUGUUGGCUUUUGAAGGUCGUUGCUGGCUUAAUUAGAAA-AAAGGCAGUCGGGCUUUU--GAGAGGCGCACACU
.-..(((((((.((..((((((.((.((((((..((...((.....))..))..))...........-)))))).))))))..)).--)))))))....... ( -30.30)
>DroSim_CAF1 37554 101 - 1
G-AAGCCUCUUCAGUUCUCGAUGGCUCUUUGUUGGCUUUUGAAGGUCGUUGCUGGCUUAAUUAGAAAAAAAGGCAGUCGGGCUUUUUCGAGAGGCGCACACU
.-..(((((((.((((..(((((((.(((((........))))))))))))..))))..........(((((((......))))))).)))))))....... ( -28.40)
>DroEre_CAF1 55831 100 - 1
GAAACCCUCUUGAAUUCUCGAUGGCUCUUUGUUGGCUUUUGAAGGUCGUUGCUGGCUUAAUUAGAAA-AAAGGCAGUCGG-UUCUUUCGAGAGGCGCACACU
.....(((((((((...(((((.((.((((((..((...((.....))..))..))...........-)))))).)))))-....)))))))))........ ( -26.80)
>DroYak_CAF1 57060 101 - 1
GAAACCCUCUCGAAUUCUCGAUGGCUCUUUGUUGGCUUUCGAAGGUCGUUGCUGGCUUAAUUAGAAA-AAAGGCAGUCGGGCUUUUUCGAGAGGCGCACACU
.....(((((((((..((((((.((.((((((..((...((.....))..))..))...........-)))))).))))))....)))))))))........ ( -33.10)
>consensus
G_AAGCCUCUUGAGUUCUCGAUGGCUCUUUGUUGGCUUUUGAAGGUCGUUGCUGGCUUAAUUAGAAA_AAAGGCAGUCGGGCUUUUUCGAGAGGCGCACACU
....((((((((((..((((((.((.((((((..((...((.....))..))..))............)))))).))))))....))))))))))....... (-28.34 = -29.18 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:41 2006