Locus 8301

Sequence ID X_DroMel_CAF1
Location 20,639,931 – 20,640,021
Length 90
Max. P 0.761460
window13628

overview

Window 8

Location 20,639,931 – 20,640,021
Length 90
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 75.08
Mean single sequence MFE -14.67
Consensus MFE -13.53
Energy contribution -12.87
Covariance contribution -0.66
Combinations/Pair 1.20
Mean z-score 0.08
Structure conservation index 0.92
SVM decision value 0.50
SVM RNA-class probability 0.761460
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20639931 90 - 22224390
--AUAGCUAAAUCU----------CUGCUAAAAUGCAUUCUUUUUUCUUUAUAUUUUCAGAUCGUCGAGUGUCUAUGAGGACAGCUGAAAGUAUUUUCUUUU
--.((((.......----------..))))....................((((((((((.((.(((........))).))...))))))))))........ ( -14.70)
>DroSec_CAF1 44125 101 - 1
GCUAAUUGUAAUGCUUAAAAAUCUCUGUUA-ACUGCAUUCUUUUUUCUCUAUAUUUUCAGAUCGUCAAGUGUCUAUGAGGACAGCUGAAAGUAUUUUCUUUU
.........(((((................-...)))))...........((((((((((.((.(((........))).))...))))))))))........ ( -15.01)
>DroEre_CAF1 44873 101 - 1
CCUAAUAAUAGAAUUUAAAUACCUCUGCUA-AAUCCUUCCGUUUGUCUCUAUGCUUUCAGAUCGUCGAGUGUCUAUGAGGACAGCUGAAAGUAUUUUGUUUU
......(((((((...............((-(((......)))))......(((((((((.((.(((........))).))...)))))))))))))))).. ( -14.30)
>consensus
_CUAAUAAUAAUAUUUAAA_A_CUCUGCUA_AAUGCAUUCUUUUUUCUCUAUAUUUUCAGAUCGUCGAGUGUCUAUGAGGACAGCUGAAAGUAUUUUCUUUU
..................................................((((((((((.((.(((........))).))...))))))))))........ (-13.53 = -12.87 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:29 2006